Non-Coding RNA Search

rjej03b_d14.y1

Sequence:


               
               CATTTCTCCAGCAGCACACAGGAAGGTCCCTAACTGATCAGTAACTCACCCTTCCCCAAG
TTGTCAAGGTCACCAGGCCAATCAGGACACAAAGAGGAGCCAGGGCCACTGATTACTGAC
TTTCCTTCCCTTCATCCCCCAGGATTGAAGAACCAGCAAAGCATCCCCTCCAAGAATATC
CCTCTAGGTCAGGATTCACCCATCCCCTATCTCTGGTCAACCAGCTGCTTTCCAGGGGCA
CTAGAAGAGTCCTTAGCCCTGTGACCACCCAACTGCATCTCCTAGAACCATAGGTTAGCA
ACCTCTCTCCCTCCAGGAGGGTCTTGGCCCCTGACTTCCTCCTCAGTATTCTTGGATCAG
CAAGCTGCCCATCACCCCAGACTTGGGTCCTGCAATTTCAGTGGCCACCCCTAGAACTGA
CGATGAGGTGCTTATATGCCTTGTCCCCAGCCCCCAGCACACAGTGGGTGGCCAATAAAG
TTGGTTATCCAGTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTCTCCAGCAGCACACAGGAAGGTCCCTAACTGATCAGTAACTCACCCTTCCCCAAG
TTGTCAAGGTCACCAGGCCAATCAGGACACAAAGAGGAGCCAGGGCCACTGATTACTGAC
TTTCCTTCCCTTCATCCCCCAGGATTGAAGAACCAGCAAAGCATCCCCTCCAAGAATATC
CCTCTAGGTCAGGATTCACCCATCCCCTATCTCTGGTCAACCAGCTGCTTTCCAGGGGCA
CTAGAAGAGTCCTTAGCCCTGTGACCACCCAACTGCATCTCCTAGAACCATAGGTTAGCA
ACCTCTCTCCCTCCAGGAGGGTCTTGGCCCCTGACTTCCTCCTCAGTATTCTTGGATCAG
CAAGCTGCCCATCACCCCAGACTTGGGTCCTGCAATTTCAGTGGCCACCCCTAGAACTGA
CGATGAGGTGCTTATATGCCTTGTCCCCAGCCCCCAGCACACAGTGGGTGGCCAATAAAG
TTGGTTATCCAGTGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               390-496, - strand, RNAz p=0.847705

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-496, - strand, RNAz p=0.847705

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-496, gnl|bosTau2|chr22 (39376821-39377303)
               

               
               1-496, gnl|Hg17|chr3 (48670063-48670592)
               

               
               1-496, gnl|Mm7|chr9 (108541575-108540864)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-496, gnl|bosTau2|chr22 (39376821-39377303)
               

               
               1-496, gnl|Hg17|chr3 (48670063-48670592)
               

               
               1-496, gnl|Mm7|chr9 (108541575-108540864)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-496, gnl\|bosTau2\|chr22 (39376821-39377303)
	1-496, gnl\|Hg17\|chr3 (48670063-48670592)
	1-496, gnl\|Mm7\|chr9 (108541575-108540864)