Non-Coding RNA Search

rjej04b_g17.y1

Sequence:


               
               CCGGAGCCCCGGAGCAGGAGGCTGGGGCGGAGGGCCCTAGGCCAAGCCCACCCTGGGCAC
CAGGGATGACCCTCTTCCCCGCCACCGGCCCCCAGGCTGGCATCTCTGCCCCCAGCTCCA
GGAGGGGCCAGACAGAAGCAGCCATTGGGCATCTCAGGTTTGAGGGGGATATGGGCCGGG
AACTACCCAGAAGCATCTGGGAGGCAGCAGGGAGGGGGGAGGAGGATGTGTGGCCGGGCC
TCACAGCCCTGCTGCTCCCACCGACCTCTCTGGCCCAACTCAAGGCTGCAAAGAGACTTG
ACTAAGCTTGACAATCCCAAAGGCCGGGTCCCACACCTGGCCCTGCCTGCCGGGTCCTGC
CCCCACCCTCACCCCCATCCCCTTCCCTCTCAATCTGTCTCTGTCTCCCTCTTCTCCTTT
GTGTCTCTGTCTCTCTATGGGTTGTGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAGCCCCGGAGCAGGAGGCTGGGGCGGAGGGCCCTAGGCCAAGCCCACCCTGGGCAC
CAGGGATGACCCTCTTCCCCGCCACCGGCCCCCAGGCTGGCATCTCTGCCCCCAGCTCCA
GGAGGGGCCAGACAGAAGCAGCCATTGGGCATCTCAGGTTTGAGGGGGATATGGGCCGGG
AACTACCCAGAAGCATCTGGGAGGCAGCAGGGAGGGGGGAGGAGGATGTGTGGCCGGGCC
TCACAGCCCTGCTGCTCCCACCGACCTCTCTGGCCCAACTCAAGGCTGCAAAGAGACTTG
ACTAAGCTTGACAATCCCAAAGGCCGGGTCCCACACCTGGCCCTGCCTGCCGGGTCCTGC
CCCCACCCTCACCCCCATCCCCTTCCCTCTCAATCTGTCTCTGTCTCCCTCTTCTCCTTT
GTGTCTCTGTCTCTCTATGGGTTGTGTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-278, - strand, RNAz p=0.996917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-278, - strand, RNAz p=0.996917

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               119-278, CR981868 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016H211 5', 
(emb|CR981868.1|), blast E-value=0, identity=96.88% 
               

               
               119-270, PM2-CI0157-161100-001-e05 CI0157 Homo sapiens cDNA, mRNA sequence 
(gb|BF809909.1|), blast E-value=6.02558e-44, identity=92.16% 
               

               
               119-193, AMGNNUC (gb|CB740899.1|), blast E-value=1e-23, identity=96%
               

               
               119-193, AMGNNUC (gb|CB749245.1|), blast E-value=1e-23, identity=96%
               

               
               119-193, AGENCOURT_50136770 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone 
(gb|DN931368.1|), blast E-value=1e-23, identity=96% 
               

               
               119-193, DS221A_A07 Eppig/Hampl oocyte Mus musculus cDNA clone DS221A_A07 
(gb|DV662631.1|), blast E-value=7e-19, identity=93.33%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               119-278, CR981868 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016H211 5', 
(emb|CR981868.1|), blast E-value=0, identity=96.88% 
               

               
               119-270, PM2-CI0157-161100-001-e05 CI0157 Homo sapiens cDNA, mRNA sequence 
(gb|BF809909.1|), blast E-value=6.02558e-44, identity=92.16% 
               

               
               119-193, AMGNNUC (gb|CB740899.1|), blast E-value=1e-23, identity=96%
               

               
               119-193, AMGNNUC (gb|CB749245.1|), blast E-value=1e-23, identity=96%
               

               
               119-193, AGENCOURT_50136770 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone 
(gb|DN931368.1|), blast E-value=1e-23, identity=96% 
               

               
               119-193, DS221A_A07 Eppig/Hampl oocyte Mus musculus cDNA clone DS221A_A07 
(gb|DV662631.1|), blast E-value=7e-19, identity=93.33%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-450, gnl|bosTau2|chr5 (22435961-22436411)
               

               
               1-450, gnl|Hg17|chr12 (47701709-47701260)
               

               
               1-450, gnl|Mm7|chr15 (98819638-98819207)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-450, gnl|bosTau2|chr5 (22435961-22436411)
               

               
               1-450, gnl|Hg17|chr12 (47701709-47701260)
               

               
               1-450, gnl|Mm7|chr15 (98819638-98819207)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	119-278, CR981868 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016H211 5', (emb\|CR981868.1\|), blast E-value=0, identity=96.88%
	119-270, PM2-CI0157-161100-001-e05 CI0157 Homo sapiens cDNA, mRNA sequence (gb\|BF809909.1\|), blast E-value=6.02558e-44, identity=92.16%
	119-193, AMGNNUC (gb\|CB740899.1\|), blast E-value=1e-23, identity=96%
	119-193, AMGNNUC (gb\|CB749245.1\|), blast E-value=1e-23, identity=96%
	119-193, AGENCOURT_50136770 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone (gb\|DN931368.1\|), blast E-value=1e-23, identity=96%
	119-193, DS221A_A07 Eppig/Hampl oocyte Mus musculus cDNA clone DS221A_A07 (gb\|DV662631.1\|), blast E-value=7e-19, identity=93.33%

	1-450, gnl\|bosTau2\|chr5 (22435961-22436411)
	1-450, gnl\|Hg17\|chr12 (47701709-47701260)
	1-450, gnl\|Mm7\|chr15 (98819638-98819207)