Non-Coding RNA Search

rjej05b_g19.y1

Sequence:


               
               TGGATTCAGACGTTCATGACCTAAGCTCAGGCCTTTGTAGGTAAAGAATGGGGGCACTGT
GCTATGTTTAGTTTAGAAACAAACGCATGAGCTCAGGGCTTTTCCTAAGTGTGGTCAATG
GTGGTGCTTAAGTTGGACATTAGCAACATCCTACAGAATGGTTCACATGTCTTGCCTAAA
ATCCTTCCCTCCATAAACCCAAATATCTGACAAAAACCAAAAGCTGCAGACTGGGGCCGC
CTAGACTCCTGGACATGTCCTTAACCAAATAGAGTATCTGTTAAGCCCTGGTGCCTAGGA
GTCAATTGTTTTAAAAGAGGCAGTGGTGATAAGTTTATATCCTGCTTCTTCAGCATTTTA
CTGAAAATATTTTATACTGACCGAATGGGTTAAATTATGAAGCTTGATAAGTACATATGC
ACATTACCCATCCTTAGCTTTAGAAGAAGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATTCAGACGTTCATGACCTAAGCTCAGGCCTTTGTAGGTAAAGAATGGGGGCACTGT
GCTATGTTTAGTTTAGAAACAAACGCATGAGCTCAGGGCTTTTCCTAAGTGTGGTCAATG
GTGGTGCTTAAGTTGGACATTAGCAACATCCTACAGAATGGTTCACATGTCTTGCCTAAA
ATCCTTCCCTCCATAAACCCAAATATCTGACAAAAACCAAAAGCTGCAGACTGGGGCCGC
CTAGACTCCTGGACATGTCCTTAACCAAATAGAGTATCTGTTAAGCCCTGGTGCCTAGGA
GTCAATTGTTTTAAAAGAGGCAGTGGTGATAAGTTTATATCCTGCTTCTTCAGCATTTTA
CTGAAAATATTTTATACTGACCGAATGGGTTAAATTATGAAGCTTGATAAGTACATATGC
ACATTACCCATCCTTAGCTTTAGAAGAAGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-345, - strand, RNAz p=0.854742

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-345, - strand, RNAz p=0.854742

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-467, gnl|bosTau2|chr11 (76299587-76299123)
               

               
               1-467, gnl|Hg17|chr9 (123441003-123440520)
               

               
               1-467, gnl|Mm7|chr2 (37981013-37980632)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-467, gnl|bosTau2|chr11 (76299587-76299123)
               

               
               1-467, gnl|Hg17|chr9 (123441003-123440520)
               

               
               1-467, gnl|Mm7|chr2 (37981013-37980632)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-467, gnl\|bosTau2\|chr11 (76299587-76299123)
	1-467, gnl\|Hg17\|chr9 (123441003-123440520)
	1-467, gnl\|Mm7\|chr2 (37981013-37980632)