Non-Coding RNA Search

rjej06b_g21.y1

Sequence:


               
               GATTGTCCAGAGGATGCCAACACATATATTCACAGAGCAGGTAGAACTGCCAGGTACAAA
GAGGATGGTGAAGCTTTATTAATTTTGCTTCCCTCAGAAGAAAAAGGGATGGTGCAGCAG
CTTCTTCAGAAGAAAGTGCCTGTGAAGGAAATCAAAATCAATCCAGAAAAACTTATAGAT
GTTCAGAAAAAATTGGAATCGTTTTTAGCCCAAGATCAAGATTTAAAAGAAAGAGCCCAA
AGGTGTTTTGTCTCCTACATACGTTCAGTATATCTGATGAAGGATAAAGAAATATTTGAT
GTGAGCAAGTTACCTATACGTGAATATGCCCTGTCTCTTGGTCTTGCTGTGGCACCGCGG
ATAAGATTTCTTCAGAGAATGCAGAAACAACCCACCAAAGAACTGGAAGTGAGCCAGGAT
GATAAAGTTGTTGAGTCAAGTGCTCCCTCTCTCACCAATGAAGAAGTGGAAGAATTTAGA
GCTTACTTCAGTGAGAAGATGTCTATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGTCCAGAGGATGCCAACACATATATTCACAGAGCAGGTAGAACTGCCAGGTACAAA
GAGGATGGTGAAGCTTTATTAATTTTGCTTCCCTCAGAAGAAAAAGGGATGGTGCAGCAG
CTTCTTCAGAAGAAAGTGCCTGTGAAGGAAATCAAAATCAATCCAGAAAAACTTATAGAT
GTTCAGAAAAAATTGGAATCGTTTTTAGCCCAAGATCAAGATTTAAAAGAAAGAGCCCAA
AGGTGTTTTGTCTCCTACATACGTTCAGTATATCTGATGAAGGATAAAGAAATATTTGAT
GTGAGCAAGTTACCTATACGTGAATATGCCCTGTCTCTTGGTCTTGCTGTGGCACCGCGG
ATAAGATTTCTTCAGAGAATGCAGAAACAACCCACCAAAGAACTGGAAGTGAGCCAGGAT
GATAAAGTTGTTGAGTCAAGTGCTCCCTCTCTCACCAATGAAGAAGTGGAAGAATTTAGA
GCTTACTTCAGTGAGAAGATGTCTATTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-190, - strand, RNAz p=0.983105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-190, - strand, RNAz p=0.983105

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               66-206, - strand, RNAmicro p=0.998683

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               66-206, - strand, RNAmicro p=0.998683

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-415, gnl|bosTau2|chr13 (20956985-20957408)
               

               
               1-415, gnl|Hg17|chr10 (31249564-31249169)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-415, gnl|bosTau2|chr13 (20956985-20957408)
               

               
               1-415, gnl|Hg17|chr10 (31249564-31249169)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-415, gnl\|bosTau2\|chr13 (20956985-20957408)
	1-415, gnl\|Hg17\|chr10 (31249564-31249169)