Non-Coding RNA Search

rjej09b_d23.y1

Sequence:


               
               CAGGCAAGCATGATTCATTTGACAAGTACACTTCGTAGCCAGCCCTTACTTTCAGAAAGA
CATTTCTTCCATCAACTGCCATATGCTTCTGTGTTGAGAGTTTAGAAAGAACCGTAAAAT
AGTCAGCAAGGCAACCCAACCTTCCATTTCATAGAAAATCTAGCACTTGGAGCTCTTCCA
GTATGCCGGCATTATTCCCGGTACAttacatgtgttaatttgtttaatcttcataacaac
cctgtgaaatagatgtgctgttgtccccattttacagatgaagaaactgagggtcataga
ggttcagtaGACTGCCTGCATAGCTAGAAGGTAGTGGAGCCCAGAGTCAGAGCCTGGCAG
TCTGGCTTTAGAGTCCATGTTTATATACCGACCTGTAGTAAGTGTTACTACTTACCCAGT
GCTCTAGATTGCTAGACACTCTTGTAACCACTTTATATATACTACTTAATCTCATTCTCA
TAATAACTCCATAATGCTTGAGTGCCATCATTTTTGACATGCTAAAGTTTAAAACTCATG
GCGGGATTTTAAATGATCCAAAATTACATATAATCTTTTGCTTGTATTTTATGCCTGTAT
TGTCTATCCTGACTTCTAGGGTCGTTGCTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCAAGCATGATTCATTTGACAAGTACACTTCGTAGCCAGCCCTTACTTTCAGAAAGA
CATTTCTTCCATCAACTGCCATATGCTTCTGTGTTGAGAGTTTAGAAAGAACCGTAAAAT
AGTCAGCAAGGCAACCCAACCTTCCATTTCATAGAAAATCTAGCACTTGGAGCTCTTCCA
GTATGCCGGCATTATTCCCGGTACAttacatgtgttaatttgtttaatcttcataacaac
cctgtgaaatagatgtgctgttgtccccattttacagatgaagaaactgagggtcataga
ggttcagtaGACTGCCTGCATAGCTAGAAGGTAGTGGAGCCCAGAGTCAGAGCCTGGCAG
TCTGGCTTTAGAGTCCATGTTTATATACCGACCTGTAGTAAGTGTTACTACTTACCCAGT
GCTCTAGATTGCTAGACACTCTTGTAACCACTTTATATATACTACTTAATCTCATTCTCA
TAATAACTCCATAATGCTTGAGTGCCATCATTTTTGACATGCTAAAGTTTAAAACTCATG
GCGGGATTTTAAATGATCCAAAATTACATATAATCTTTTGCTTGTATTTTATGCCTGTAT
TGTCTATCCTGACTTCTAGGGTCGTTGCTCAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               338-443, + strand, RNAz p=0.999947

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-443, + strand, RNAz p=0.999947

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-637, gnl|bosTau2|chr12 (21776242-21775598)
               

               
               1-637, gnl|Hg17|chr13 (72220080-72220731)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-637, gnl|bosTau2|chr12 (21776242-21775598)
               

               
               1-637, gnl|Hg17|chr13 (72220080-72220731)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-637, gnl\|bosTau2\|chr12 (21776242-21775598)
	1-637, gnl\|Hg17\|chr13 (72220080-72220731)