Non-Coding RNA Search

rjej09b_i8.y1

Sequence:


               
               AGATGGCGGCCCAGCACCTTGGCTCCATCTGTTTCCAGCTTGTCCACCGCAGCCTGTCAT
ACGCAGGTGGGCCTACGCCTCCAGCTTCTGTCTGAGGCTTGATCTTTCTCCAGAGATGGG
ATTTAAGATCTCAGTGAGAGCTTCCTATGAAGAACTCCAGAAGTCAGGCTTAAATTTTGG
AGATGTGAAATTTAGGATCAAAAAGGTTAAGGGGCAGCAGCTGGTCTGGCCCCTAAATGA
GTTAACCTGTTCCTTCTGCATCCCTACCCTCCTAAGCCCGAATTAGAGCTTTCTGTGATG
ATCGATTGTCAGCTTTAAGATACATTGTGCTTTTGTAACTTGATGCTTTTATCCTGTTTT
TAAATTGAAATGAGGTGAAACGACTTTCATAAAAGAACCTTTTGAAAATATATTTTTCCA
AAATGATCATTTTCAATCTTTTGCTAAATATTTTGGAATTCTATTTAAAAAAAAAAAAGT
GATCAAGATCTAAAGGAAATTAGTCCCAACCAACAAAACCCTTGAATGGTTATCTACCTC
ATTTTAGGCAATCAAGATTCTAGGGAGTCTTGAACCCAGAATGTGACCATTGTGAATGTA
ATTAATCTCAGCTGTACTGTGAATGCTAATTACTAGAAAACAAGTGCATCCTGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGGCGGCCCAGCACCTTGGCTCCATCTGTTTCCAGCTTGTCCACCGCAGCCTGTCAT
ACGCAGGTGGGCCTACGCCTCCAGCTTCTGTCTGAGGCTTGATCTTTCTCCAGAGATGGG
ATTTAAGATCTCAGTGAGAGCTTCCTATGAAGAACTCCAGAAGTCAGGCTTAAATTTTGG
AGATGTGAAATTTAGGATCAAAAAGGTTAAGGGGCAGCAGCTGGTCTGGCCCCTAAATGA
GTTAACCTGTTCCTTCTGCATCCCTACCCTCCTAAGCCCGAATTAGAGCTTTCTGTGATG
ATCGATTGTCAGCTTTAAGATACATTGTGCTTTTGTAACTTGATGCTTTTATCCTGTTTT
TAAATTGAAATGAGGTGAAACGACTTTCATAAAAGAACCTTTTGAAAATATATTTTTCCA
AAATGATCATTTTCAATCTTTTGCTAAATATTTTGGAATTCTATTTAAAAAAAAAAAAGT
GATCAAGATCTAAAGGAAATTAGTCCCAACCAACAAAACCCTTGAATGGTTATCTACCTC
ATTTTAGGCAATCAAGATTCTAGGGAGTCTTGAACCCAGAATGTGACCATTGTGAATGTA
ATTAATCTCAGCTGTACTGTGAATGCTAATTACTAGAAAACAAGTGCATCCTGGGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               65-259, + strand, RNAz p=0.698846
               

               
               538-657, - strand, RNAz p=0.729166

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-259, + strand, RNAz p=0.698846
               

               
               538-657, - strand, RNAz p=0.729166

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK092782, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK092782, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               8-657, gnl|bosTau2|chr7 (28451301-28451946)
               

               
               8-657, gnl|canFam2|chr11 (24114584-24115099)
               

               
               8-657, gnl|echTel1|scaffold_311768 (47214-47800)
               

               
               8-657, gnl|hg17|chr5 (132178792-132179415)
               

               
               8-657, gnl|Hg17|chr5 (132178935-132179625)
               

               
               8-657, gnl|loxAfr1|scaffold_26564 (11473-10838)
               

               
               8-657, gnl|mm7|chr11 (53435090-53434515)
               

               
               8-657, gnl|Mm7|chr11 (53434956-53434023)
               

               
               8-657, gnl|monDom2|scaffold_6 (92489975-92489394)
               

               
               8-657, gnl|panTro1|chr4 (138516520-138517142)
               

               
               8-657, gnl|rheMac2|chr6 (129222599-129223219)
               

               
               8-657, gnl|rn3|chr10 (38952614-38952022)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-657, gnl|bosTau2|chr7 (28451301-28451946)
               

               
               8-657, gnl|canFam2|chr11 (24114584-24115099)
               

               
               8-657, gnl|echTel1|scaffold_311768 (47214-47800)
               

               
               8-657, gnl|hg17|chr5 (132178792-132179415)
               

               
               8-657, gnl|Hg17|chr5 (132178935-132179625)
               

               
               8-657, gnl|loxAfr1|scaffold_26564 (11473-10838)
               

               
               8-657, gnl|mm7|chr11 (53435090-53434515)
               

               
               8-657, gnl|Mm7|chr11 (53434956-53434023)
               

               
               8-657, gnl|monDom2|scaffold_6 (92489975-92489394)
               

               
               8-657, gnl|panTro1|chr4 (138516520-138517142)
               

               
               8-657, gnl|rheMac2|chr6 (129222599-129223219)
               

               
               8-657, gnl|rn3|chr10 (38952614-38952022)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	65-259, + strand, RNAz p=0.698846
	538-657, - strand, RNAz p=0.729166

	8-657, gnl\|bosTau2\|chr7 (28451301-28451946)
	8-657, gnl\|canFam2\|chr11 (24114584-24115099)
	8-657, gnl\|echTel1\|scaffold_311768 (47214-47800)
	8-657, gnl\|hg17\|chr5 (132178792-132179415)
	8-657, gnl\|Hg17\|chr5 (132178935-132179625)
	8-657, gnl\|loxAfr1\|scaffold_26564 (11473-10838)
	8-657, gnl\|mm7\|chr11 (53435090-53434515)
	8-657, gnl\|Mm7\|chr11 (53434956-53434023)
	8-657, gnl\|monDom2\|scaffold_6 (92489975-92489394)
	8-657, gnl\|panTro1\|chr4 (138516520-138517142)
	8-657, gnl\|rheMac2\|chr6 (129222599-129223219)
	8-657, gnl\|rn3\|chr10 (38952614-38952022)