Non-Coding RNA Search

rjej13b_e8.y1

Sequence:


               
               AACTATTTCAATATTAAGAATTTATAATCTAGTTCTTTTAAAAGTAAGGTATGTGAGAAT
AGACATATTCATTGAACTTTAAGGTCATGGTAAGTGGGTAACAGAACCTTGCACAAATAA
TATATAGCCTTATAGGTAAGAAAAGAAAAGGGCATAGAAATATTGATGTGTTTGGGGGTA
TTTGAAACCATCTATCCCACCCTTTATTTTTTTAGGTGTGACAACTCAAATCTTTAGTCT
TAAATGATTTGCCCAAGGTCAAATCAGAATCCAGATTACCTGGTTCTTTAGTCTTTGCAA
TTACTTCTGTAATTGACAATTCATGATAATTTGGCAGGTAGTTGTGAAGTTAATATTTCC
TTTTCTATGGAAAAATTATTCAAGTACAGTGTCATCTTTCAATTTGCATGACATGATCAT
CTGTTTGTAATGTAGTCTTAATTAGGAACCTTCCCCATCCTCAGAGAGGAAACTATAACT
TGCTCACAGCACTCCTGCTTTATTTGAGCAGCTCTGCTTCCTTTAGTATATTAGAGATGA
GAGGAATGATAAGAAGTTCTGGCTATCAGTGGTGCTAGCAGTAGTTAAGAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTATTTCAATATTAAGAATTTATAATCTAGTTCTTTTAAAAGTAAGGTATGTGAGAAT
AGACATATTCATTGAACTTTAAGGTCATGGTAAGTGGGTAACAGAACCTTGCACAAATAA
TATATAGCCTTATAGGTAAGAAAAGAAAAGGGCATAGAAATATTGATGTGTTTGGGGGTA
TTTGAAACCATCTATCCCACCCTTTATTTTTTTAGGTGTGACAACTCAAATCTTTAGTCT
TAAATGATTTGCCCAAGGTCAAATCAGAATCCAGATTACCTGGTTCTTTAGTCTTTGCAA
TTACTTCTGTAATTGACAATTCATGATAATTTGGCAGGTAGTTGTGAAGTTAATATTTCC
TTTTCTATGGAAAAATTATTCAAGTACAGTGTCATCTTTCAATTTGCATGACATGATCAT
CTGTTTGTAATGTAGTCTTAATTAGGAACCTTCCCCATCCTCAGAGAGGAAACTATAACT
TGCTCACAGCACTCCTGCTTTATTTGAGCAGCTCTGCTTCCTTTAGTATATTAGAGATGA
GAGGAATGATAAGAAGTTCTGGCTATCAGTGGTGCTAGCAGTAGTTAAGAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-518, - strand, RNAz p=0.722796

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-518, - strand, RNAz p=0.722796

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               14-518, gnl|bosTau2|chr2 (33000255-32999743)
               

               
               14-518, gnl|Hg17|chr2 (150242690-150242191)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-518, gnl|bosTau2|chr2 (33000255-32999743)
               

               
               14-518, gnl|Hg17|chr2 (150242690-150242191)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	14-518, gnl\|bosTau2\|chr2 (33000255-32999743)
	14-518, gnl\|Hg17\|chr2 (150242690-150242191)