Non-Coding RNA Search

rjej19b_d9.y1

Sequence:


               
               CTTCCTCACTGCGCCTGCGCAAGTCAGCTTCTGATTCTGCTACACTGTGCAGACGTGAGT
CATTCATTCTCTCCAGCAGGTTGATTTAACTTCGCTTAGAGCCTAGGAGAGGACAGGTCT
TAAGGCTTCTCCATTCCCTCTTCATCCCCTCCTTGGCAGTGTGACCTATGACTCTGCCAT
CTCTGTTTTCTTTTACACCCCAGCCCATTGACTCTTCAAGTAGCAGTTGCTCAGGTGTTG
TCCTCTCAGCATGTTCTAATGGGTCAAAAGCAGGATCAGAAGGGTAAGGCAAATGGCCTG
GAATTCCACAGGAAGGTGTTGATAAATGCGCGAGAggagttcccactgtggcacagtggg
ttgagaatgccactgcagcggctcaggtcgctgtggaggtacgggtttgcctccaggcca
ggcacaatgggataaaggatctggcgttgctgcagctgCCCTGGGAGGAACTTCCATATG
CTGTGAGTGCAGCCATTAAAAATTAAAATAGGggagttcccgtggtgccttagcggaaac
gaatctaactagcatccatgaggacgcaggtttgatccctggcctcgctcagtggcttaa
ggatctggcgttgctgtgggctgtggtatagttcacagat

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTCACTGCGCCTGCGCAAGTCAGCTTCTGATTCTGCTACACTGTGCAGACGTGAGT
CATTCATTCTCTCCAGCAGGTTGATTTAACTTCGCTTAGAGCCTAGGAGAGGACAGGTCT
TAAGGCTTCTCCATTCCCTCTTCATCCCCTCCTTGGCAGTGTGACCTATGACTCTGCCAT
CTCTGTTTTCTTTTACACCCCAGCCCATTGACTCTTCAAGTAGCAGTTGCTCAGGTGTTG
TCCTCTCAGCATGTTCTAATGGGTCAAAAGCAGGATCAGAAGGGTAAGGCAAATGGCCTG
GAATTCCACAGGAAGGTGTTGATAAATGCGCGAGAggagttcccactgtggcacagtggg
ttgagaatgccactgcagcggctcaggtcgctgtggaggtacgggtttgcctccaggcca
ggcacaatgggataaaggatctggcgttgctgcagctgCCCTGGGAGGAACTTCCATATG
CTGTGAGTGCAGCCATTAAAAATTAAAATAGGggagttcccgtggtgccttagcggaaac
gaatctaactagcatccatgaggacgcaggtttgatccctggcctcgctcagtggcttaa
ggatctggcgttgctgtgggctgtggtatagttcacagat

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               10-305, gnl|bosTau2|chr10 (26681705-26681390)
               

               
               10-305, gnl|canFam2|chr30 (10933338-10933795)
               

               
               10-305, gnl|dasNov1|scaffold_12152 (7803-7307)
               

               
               10-305, gnl|echTel1|scaffold_315379 (45138-44640)
               

               
               10-305, gnl|hg17|chr15 (38886102-38886603)
               

               
               10-305, gnl|Hg17|chr15 (38886566-38886252)
               

               
               10-305, gnl|loxAfr1|scaffold_2794 (14123-14627)
               

               
               10-305, gnl|mm7|chr2 (118948874-118949307)
               

               
               10-305, gnl|Mm7|chr2 (118949273-118948987)
               

               
               10-305, gnl|panTro1|chr16 (38799598-38800098)
               

               
               10-305, gnl|rheMac2|chr7 (19187241-19187741)
               

               
               10-305, gnl|rn3|chr3 (105617623-105618061)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-305, gnl|bosTau2|chr10 (26681705-26681390)
               

               
               10-305, gnl|canFam2|chr30 (10933338-10933795)
               

               
               10-305, gnl|dasNov1|scaffold_12152 (7803-7307)
               

               
               10-305, gnl|echTel1|scaffold_315379 (45138-44640)
               

               
               10-305, gnl|hg17|chr15 (38886102-38886603)
               

               
               10-305, gnl|Hg17|chr15 (38886566-38886252)
               

               
               10-305, gnl|loxAfr1|scaffold_2794 (14123-14627)
               

               
               10-305, gnl|mm7|chr2 (118948874-118949307)
               

               
               10-305, gnl|Mm7|chr2 (118949273-118948987)
               

               
               10-305, gnl|panTro1|chr16 (38799598-38800098)
               

               
               10-305, gnl|rheMac2|chr7 (19187241-19187741)
               

               
               10-305, gnl|rn3|chr3 (105617623-105618061)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	10-305, gnl\|bosTau2\|chr10 (26681705-26681390)
	10-305, gnl\|canFam2\|chr30 (10933338-10933795)
	10-305, gnl\|dasNov1\|scaffold_12152 (7803-7307)
	10-305, gnl\|echTel1\|scaffold_315379 (45138-44640)
	10-305, gnl\|hg17\|chr15 (38886102-38886603)
	10-305, gnl\|Hg17\|chr15 (38886566-38886252)
	10-305, gnl\|loxAfr1\|scaffold_2794 (14123-14627)
	10-305, gnl\|mm7\|chr2 (118948874-118949307)
	10-305, gnl\|Mm7\|chr2 (118949273-118948987)
	10-305, gnl\|panTro1\|chr16 (38799598-38800098)
	10-305, gnl\|rheMac2\|chr7 (19187241-19187741)
	10-305, gnl\|rn3\|chr3 (105617623-105618061)