Non-Coding RNA Search

rjej26b_a24.y1

Sequence:


               
               CCTCGTGCCGGAGTGTCTCAGTGTTGCGGTGTAAGACAGCAGAGGAGCCATTGAGCTAAG
GAGAGGAAAGCAGGTTTTACTGAATTTTCTATACTTTATAAACAGGCAGTGGAATATTCA
TGGTTAATGGTAGTGGCATTCAGAAATACGTTATAAAATGTCTTAAGTTATTTGAGCCAT
TATGTGACATATAATATGCATGATCAAATATCAGGTTTAAGCCATAGTGTTAAAATAAAA
TGATTAATATATTTATTCACTTGAAAACATTGTATGTGTCCTTGTTGACTTTGCCCTTAA
AACATCCTTTTACGATTCAAGATATGAAAACGTTTCTGTTTCTCTAATGGTTTATTCTTT
TATTCTGTTCTTATCTCTTTCTATTTATTGCCTTATTTTATATTTGAAACCCTTAAAAAT
AGATAATGTAAGAAATTCCATTACCTGCAATAAACTCTCCTCTGGTAAAGATTTTACAAA
AAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGTGCCGGAGTGTCTCAGTGTTGCGGTGTAAGACAGCAGAGGAGCCATTGAGCTAAG
GAGAGGAAAGCAGGTTTTACTGAATTTTCTATACTTTATAAACAGGCAGTGGAATATTCA
TGGTTAATGGTAGTGGCATTCAGAAATACGTTATAAAATGTCTTAAGTTATTTGAGCCAT
TATGTGACATATAATATGCATGATCAAATATCAGGTTTAAGCCATAGTGTTAAAATAAAA
TGATTAATATATTTATTCACTTGAAAACATTGTATGTGTCCTTGTTGACTTTGCCCTTAA
AACATCCTTTTACGATTCAAGATATGAAAACGTTTCTGTTTCTCTAATGGTTTATTCTTT
TATTCTGTTCTTATCTCTTTCTATTTATTGCCTTATTTTATATTTGAAACCCTTAAAAAT
AGATAATGTAAGAAATTCCATTACCTGCAATAAACTCTCCTCTGGTAAAGATTTTACAAA
AAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-475, + strand, RNAz p=0.65323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-475, + strand, RNAz p=0.65323

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               29-475, gnl|bosTau2|chr6 (14876322-14876768)
               

               
               29-475, gnl|canFam2|chr32 (17052247-17052637)
               

               
               29-475, gnl|dasNov1|scaffold_17809 (16905-16547)
               

               
               29-475, gnl|hg17|chr4 (92217896-92218294)
               

               
               29-475, gnl|Hg17|chr4 (92217900-92218357)
               

               
               29-475, gnl|mm7|chr6 (61788886-61789213)
               

               
               29-475, gnl|Mm7|chr6 (61788715-61789273)
               

               
               29-475, gnl|panTro1|chr3 (108247306-108247704)
               

               
               29-475, gnl|rheMac2|chr5 (83867421-83867822)
               

               
               29-475, gnl|rn3|chr4 (91010355-91010710)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-475, gnl|bosTau2|chr6 (14876322-14876768)
               

               
               29-475, gnl|canFam2|chr32 (17052247-17052637)
               

               
               29-475, gnl|dasNov1|scaffold_17809 (16905-16547)
               

               
               29-475, gnl|hg17|chr4 (92217896-92218294)
               

               
               29-475, gnl|Hg17|chr4 (92217900-92218357)
               

               
               29-475, gnl|mm7|chr6 (61788886-61789213)
               

               
               29-475, gnl|Mm7|chr6 (61788715-61789273)
               

               
               29-475, gnl|panTro1|chr3 (108247306-108247704)
               

               
               29-475, gnl|rheMac2|chr5 (83867421-83867822)
               

               
               29-475, gnl|rn3|chr4 (91010355-91010710)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	29-475, gnl\|bosTau2\|chr6 (14876322-14876768)
	29-475, gnl\|canFam2\|chr32 (17052247-17052637)
	29-475, gnl\|dasNov1\|scaffold_17809 (16905-16547)
	29-475, gnl\|hg17\|chr4 (92217896-92218294)
	29-475, gnl\|Hg17\|chr4 (92217900-92218357)
	29-475, gnl\|mm7\|chr6 (61788886-61789213)
	29-475, gnl\|Mm7\|chr6 (61788715-61789273)
	29-475, gnl\|panTro1\|chr3 (108247306-108247704)
	29-475, gnl\|rheMac2\|chr5 (83867421-83867822)
	29-475, gnl\|rn3\|chr4 (91010355-91010710)