Non-Coding RNA Search

rjej31b_l22.y1

Sequence:


               
               GAGAGAACTGAGCCAAGCCGGCAGGTGCACTGCTGTGGGGACGGCAGAGGCATGACCGGC
CACCATGGCTGGGGCTATGGCCAAAACGACGGCCCCTCACACTGGCACAAGCTGTATCCC
ATCGCCCAGGGAGACCGCCAATCACCAATCAATATCGTATCCAGCCAAGCTGTGTACTCG
CCCAGCCTGAAGCCTCTGGAGCTTTCCTATGAGTCCTGCACATCCCTCAGCATCGCCAAC
AATGGCCACTCCGTCCAAGTGGACTTTAATGACAGTGACGACCGAACTGTGGTGACTGGG
GGCCCCCTGGATGGGCCCTACCGGCTCAAGCAGTTCCATTTCCACTGGGGCAAGAAGCAC
AGTGTGGGCTCAGAGCACACGGTGGACGGCAAGTCATTCCCCAGCGAGCTGCACCTGGTT
CACTGGAACGCCAAGAAGTACAGCACCTTCGGGGAGGCAGCCTCGGCACCCGACGGCCTG
GCTGTGGTTGGTGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAACTGAGCCAAGCCGGCAGGTGCACTGCTGTGGGGACGGCAGAGGCATGACCGGC
CACCATGGCTGGGGCTATGGCCAAAACGACGGCCCCTCACACTGGCACAAGCTGTATCCC
ATCGCCCAGGGAGACCGCCAATCACCAATCAATATCGTATCCAGCCAAGCTGTGTACTCG
CCCAGCCTGAAGCCTCTGGAGCTTTCCTATGAGTCCTGCACATCCCTCAGCATCGCCAAC
AATGGCCACTCCGTCCAAGTGGACTTTAATGACAGTGACGACCGAACTGTGGTGACTGGG
GGCCCCCTGGATGGGCCCTACCGGCTCAAGCAGTTCCATTTCCACTGGGGCAAGAAGCAC
AGTGTGGGCTCAGAGCACACGGTGGACGGCAAGTCATTCCCCAGCGAGCTGCACCTGGTT
CACTGGAACGCCAAGAAGTACAGCACCTTCGGGGAGGCAGCCTCGGCACCCGACGGCCTG
GCTGTGGTTGGTGTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21707176|gb|AAH33865.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21707176|gb|AAH33865.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               91-209, + strand, RNAz p=0.807335

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-209, + strand, RNAz p=0.807335

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001014435, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001014435, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               91-289, gnl|bosTau2|chr18 (28073709-28073907)
               

               
               91-289, gnl|canFam2|chr5 (85460381-85460180)
               

               
               91-289, gnl|danRer3|chr7 (36320516-36320696)
               

               
               91-289, gnl|dasNov1|scaffold_3646 (528-325)
               

               
               91-289, gnl|echTel1|scaffold_311902 (127243-127050)
               

               
               91-289, gnl|fr1|chrUn (209488204-209488002)
               

               
               91-289, gnl|galGal2|chr11 (11618159-11617956)
               

               
               91-289, gnl|hg17|chr16 (65438410-65438613)
               

               
               91-289, gnl|Hg17|chr16 (65438433-65438631)
               

               
               91-289, gnl|loxAfr1|scaffold_28831 (12130-11930)
               

               
               91-289, gnl|mm7|chr8 (103142690-103142892)
               

               
               91-289, gnl|Mm7|chr8 (103142712-103142910)
               

               
               91-289, gnl|monDom2|scaffold_23 (20676960-20676766)
               

               
               91-289, gnl|oryCun1|scaffold_155835 (4298-4501)
               

               
               91-289, gnl|panTro1|chr18 (59678476-59678679)
               

               
               91-289, gnl|rheMac2|chr20 (65137236-65137439)
               

               
               91-289, gnl|rn3|chr19 (372418-372216)
               

               
               91-289, gnl|tetNig1|chr5 (7851907-7852087)
               


               
               388-497, gnl|bosTau2|chr18 (28077942-28078050)
               

               
               388-497, gnl|Hg17|chr16 (65442852-65442955)
               

               
               388-497, gnl|Mm7|chr8 (103147463-103147577)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-289, gnl|bosTau2|chr18 (28073709-28073907)
               

               
               91-289, gnl|canFam2|chr5 (85460381-85460180)
               

               
               91-289, gnl|danRer3|chr7 (36320516-36320696)
               

               
               91-289, gnl|dasNov1|scaffold_3646 (528-325)
               

               
               91-289, gnl|echTel1|scaffold_311902 (127243-127050)
               

               
               91-289, gnl|fr1|chrUn (209488204-209488002)
               

               
               91-289, gnl|galGal2|chr11 (11618159-11617956)
               

               
               91-289, gnl|hg17|chr16 (65438410-65438613)
               

               
               91-289, gnl|Hg17|chr16 (65438433-65438631)
               

               
               91-289, gnl|loxAfr1|scaffold_28831 (12130-11930)
               

               
               91-289, gnl|mm7|chr8 (103142690-103142892)
               

               
               91-289, gnl|Mm7|chr8 (103142712-103142910)
               

               
               91-289, gnl|monDom2|scaffold_23 (20676960-20676766)
               

               
               91-289, gnl|oryCun1|scaffold_155835 (4298-4501)
               

               
               91-289, gnl|panTro1|chr18 (59678476-59678679)
               

               
               91-289, gnl|rheMac2|chr20 (65137236-65137439)
               

               
               91-289, gnl|rn3|chr19 (372418-372216)
               

               
               91-289, gnl|tetNig1|chr5 (7851907-7852087)
               


               
               388-497, gnl|bosTau2|chr18 (28077942-28078050)
               

               
               388-497, gnl|Hg17|chr16 (65442852-65442955)
               

               
               388-497, gnl|Mm7|chr8 (103147463-103147577)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	91-289, gnl\|bosTau2\|chr18 (28073709-28073907)
	91-289, gnl\|canFam2\|chr5 (85460381-85460180)
	91-289, gnl\|danRer3\|chr7 (36320516-36320696)
	91-289, gnl\|dasNov1\|scaffold_3646 (528-325)
	91-289, gnl\|echTel1\|scaffold_311902 (127243-127050)
	91-289, gnl\|fr1\|chrUn (209488204-209488002)
	91-289, gnl\|galGal2\|chr11 (11618159-11617956)
	91-289, gnl\|hg17\|chr16 (65438410-65438613)
	91-289, gnl\|Hg17\|chr16 (65438433-65438631)
	91-289, gnl\|loxAfr1\|scaffold_28831 (12130-11930)
	91-289, gnl\|mm7\|chr8 (103142690-103142892)
	91-289, gnl\|Mm7\|chr8 (103142712-103142910)
	91-289, gnl\|monDom2\|scaffold_23 (20676960-20676766)
	91-289, gnl\|oryCun1\|scaffold_155835 (4298-4501)
	91-289, gnl\|panTro1\|chr18 (59678476-59678679)
	91-289, gnl\|rheMac2\|chr20 (65137236-65137439)
	91-289, gnl\|rn3\|chr19 (372418-372216)
	91-289, gnl\|tetNig1\|chr5 (7851907-7852087)

	388-497, gnl\|bosTau2\|chr18 (28077942-28078050)
	388-497, gnl\|Hg17\|chr16 (65442852-65442955)
	388-497, gnl\|Mm7\|chr8 (103147463-103147577)