Non-Coding RNA Search

rjej32b_m19.y1

Sequence:


               
               TGGACCCCAAAAAGCCATTCCGAAAGCTTAGTCGCTTTGGAAATGCTTTCCTCAATCGAT
TCATGTGCTCCCAGCTGCCCAATCAGGTCCTGAAGAGCATCAGCATCATTGACAGCCCTG
GCATCTTGTCTGGGGAGAAGCAGCGCATCAGCCGAGGGTATGACTTCTGCCAGGTCCTGC
AGTGGTTCGCAGAGCGGGTGGACAGGATCATCCTGCTCTTTGATGCACACAAACTGGACA
TCTCAGATGAGTTCTCGGAGGCCATCAAGGCCTTCCGGGGCCAGGACGACAAGATCCGAG
TAGTGCTGAACAAGGCCGACCAAGTGGACACACAACAGCTGATGCGTGTCTACGGGGCCC
TCATGTGGTCCCTGGGCAAGGTCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACCCCAAAAAGCCATTCCGAAAGCTTAGTCGCTTTGGAAATGCTTTCCTCAATCGAT
TCATGTGCTCCCAGCTGCCCAATCAGGTCCTGAAGAGCATCAGCATCATTGACAGCCCTG
GCATCTTGTCTGGGGAGAAGCAGCGCATCAGCCGAGGGTATGACTTCTGCCAGGTCCTGC
AGTGGTTCGCAGAGCGGGTGGACAGGATCATCCTGCTCTTTGATGCACACAAACTGGACA
TCTCAGATGAGTTCTCGGAGGCCATCAAGGCCTTCCGGGGCCAGGACGACAAGATCCGAG
TAGTGCTGAACAAGGCCGACCAAGTGGACACACAACAGCTGATGCGTGTCTACGGGGCCC
TCATGTGGTCCCTGGGCAAGGTCATCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-385, - strand, RNAz p=0.933563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-385, - strand, RNAz p=0.933563

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               155-385, gnl|bosTau2|chr10 (25032733-25032963)
               

               
               155-385, gnl|canFam2|chr30 (11938644-11938820)
               

               
               155-385, gnl|danRer3|chrNA (42382120-42381944)
               

               
               155-385, gnl|dasNov1|scaffold_15830 (16098-16275)
               

               
               155-385, gnl|echTel1|scaffold_178299 (974-1150)
               

               
               155-385, gnl|fr1|chrUn (254166581-254166828)
               

               
               155-385, gnl|galGal2|chr5 (22564054-22564230)
               

               
               155-385, gnl|hg17|chr15 (39998882-39999058)
               

               
               155-385, gnl|Hg17|chr15 (39999114-39998884)
               

               
               155-385, gnl|loxAfr1|scaffold_44534 (13551-13727)
               

               
               155-385, gnl|mm7|chr2 (119843051-119843227)
               

               
               155-385, gnl|Mm7|chr2 (119843282-119843053)
               

               
               155-385, gnl|monDom2|scaffold_53 (12746777-12746601)
               

               
               155-385, gnl|oryCun1|scaffold_102937 (4093-4269)
               

               
               155-385, gnl|panTro1|chr16_random (10402157-10402333)
               

               
               155-385, gnl|rheMac2|chr7 (20337691-20337867)
               

               
               155-385, gnl|rn3|chr3 (106505567-106505743)
               

               
               155-385, gnl|tetNig1|chrUn_random (108058014-108058259)
               

               
               155-385, gnl|xenTro1|scaffold_33 (2467792-2467616)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-385, gnl|bosTau2|chr10 (25032733-25032963)
               

               
               155-385, gnl|canFam2|chr30 (11938644-11938820)
               

               
               155-385, gnl|danRer3|chrNA (42382120-42381944)
               

               
               155-385, gnl|dasNov1|scaffold_15830 (16098-16275)
               

               
               155-385, gnl|echTel1|scaffold_178299 (974-1150)
               

               
               155-385, gnl|fr1|chrUn (254166581-254166828)
               

               
               155-385, gnl|galGal2|chr5 (22564054-22564230)
               

               
               155-385, gnl|hg17|chr15 (39998882-39999058)
               

               
               155-385, gnl|Hg17|chr15 (39999114-39998884)
               

               
               155-385, gnl|loxAfr1|scaffold_44534 (13551-13727)
               

               
               155-385, gnl|mm7|chr2 (119843051-119843227)
               

               
               155-385, gnl|Mm7|chr2 (119843282-119843053)
               

               
               155-385, gnl|monDom2|scaffold_53 (12746777-12746601)
               

               
               155-385, gnl|oryCun1|scaffold_102937 (4093-4269)
               

               
               155-385, gnl|panTro1|chr16_random (10402157-10402333)
               

               
               155-385, gnl|rheMac2|chr7 (20337691-20337867)
               

               
               155-385, gnl|rn3|chr3 (106505567-106505743)
               

               
               155-385, gnl|tetNig1|chrUn_random (108058014-108058259)
               

               
               155-385, gnl|xenTro1|scaffold_33 (2467792-2467616)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	155-385, gnl\|bosTau2\|chr10 (25032733-25032963)
	155-385, gnl\|canFam2\|chr30 (11938644-11938820)
	155-385, gnl\|danRer3\|chrNA (42382120-42381944)
	155-385, gnl\|dasNov1\|scaffold_15830 (16098-16275)
	155-385, gnl\|echTel1\|scaffold_178299 (974-1150)
	155-385, gnl\|fr1\|chrUn (254166581-254166828)
	155-385, gnl\|galGal2\|chr5 (22564054-22564230)
	155-385, gnl\|hg17\|chr15 (39998882-39999058)
	155-385, gnl\|Hg17\|chr15 (39999114-39998884)
	155-385, gnl\|loxAfr1\|scaffold_44534 (13551-13727)
	155-385, gnl\|mm7\|chr2 (119843051-119843227)
	155-385, gnl\|Mm7\|chr2 (119843282-119843053)
	155-385, gnl\|monDom2\|scaffold_53 (12746777-12746601)
	155-385, gnl\|oryCun1\|scaffold_102937 (4093-4269)
	155-385, gnl\|panTro1\|chr16_random (10402157-10402333)
	155-385, gnl\|rheMac2\|chr7 (20337691-20337867)
	155-385, gnl\|rn3\|chr3 (106505567-106505743)
	155-385, gnl\|tetNig1\|chrUn_random (108058014-108058259)
	155-385, gnl\|xenTro1\|scaffold_33 (2467792-2467616)