Non-Coding RNA Search

rjej37b_k14.y1

Sequence:


               
               GACAGTGACAGAAACGTTCAAAAACTGCCAGAGCATCCTTTTGCCTATTTAGAGATGTAA
ACAGAACTCAGAAAGGAGGAATCAGGGAACAGGTACTGTTGTGTGCATCTTGTTTACATT
TGGGATGAGTGATTGGCAGAGGAAATAAAATGAGACCACTAAATTTTTTTCATTGTTTTA
AACATCAGGTACTCATTTTCTTGATTTGAGAGTTGAGGTTAACATGACTTCTAAGGACTT
CTCTTCTGAAAAAGAAGAGACAGTCAACAGTGGGGAAAGGTGGCGGTAAAATCACTTGAC
TTCACCTGTTGCTCTGTGAGGCGAGAGCTAACTCAACAACAGTCACTTGGCGCACTTTAG
TAATCCGGGCCACCCCAGATTACACTCTAGATACTCCGCGGTATCTAATCTTTATGATCA
GTTGAATGATCAGTGTTTAAGTCTAGAAATAGTGCTTTCCTGAAAAATGTTTATATTTCA
TTGCTGTTTCCTTATTGCCTGCTAGCCAAATGGAATTTGGGCCAGCAACTGTTTGAATCT
TGTTTTTTTCCCTAGTAATTTCCTTCTACCCAAACAATCATCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGTGACAGAAACGTTCAAAAACTGCCAGAGCATCCTTTTGCCTATTTAGAGATGTAA
ACAGAACTCAGAAAGGAGGAATCAGGGAACAGGTACTGTTGTGTGCATCTTGTTTACATT
TGGGATGAGTGATTGGCAGAGGAAATAAAATGAGACCACTAAATTTTTTTCATTGTTTTA
AACATCAGGTACTCATTTTCTTGATTTGAGAGTTGAGGTTAACATGACTTCTAAGGACTT
CTCTTCTGAAAAAGAAGAGACAGTCAACAGTGGGGAAAGGTGGCGGTAAAATCACTTGAC
TTCACCTGTTGCTCTGTGAGGCGAGAGCTAACTCAACAACAGTCACTTGGCGCACTTTAG
TAATCCGGGCCACCCCAGATTACACTCTAGATACTCCGCGGTATCTAATCTTTATGATCA
GTTGAATGATCAGTGTTTAAGTCTAGAAATAGTGCTTTCCTGAAAAATGTTTATATTTCA
TTGCTGTTTCCTTATTGCCTGCTAGCCAAATGGAATTTGGGCCAGCAACTGTTTGAATCT
TGTTTTTTTCCCTAGTAATTTCCTTCTACCCAAACAATCATCACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               37-154, + strand, RNAz p=0.610988
               

               
               194-313, - strand, RNAz p=0.576117

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-154, + strand, RNAz p=0.610988
               

               
               194-313, - strand, RNAz p=0.576117

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               37-317, gnl|bosTau2|chr1 (79487474-79487197)
               

               
               37-317, gnl|canFam2|chr23 (40561199-40561782)
               

               
               37-317, gnl|dasNov1|scaffold_3933 (56999-57579)
               

               
               37-317, gnl|echTel1|scaffold_80790 (5613-5074)
               

               
               37-317, gnl|galGal2|chr9 (3407833-3407240)
               

               
               37-317, gnl|hg17|chr3 (142814137-142814728)
               

               
               37-317, gnl|Hg17|chr3 (142814438-142814703)
               

               
               37-317, gnl|loxAfr1|scaffold_11908 (20481-19859)
               

               
               37-317, gnl|mm7|chr9 (96183800-96183251)
               

               
               37-317, gnl|Mm7|chr9 (96183525-96183272)
               

               
               37-317, gnl|monDom2|scaffold_28 (12239020-12239585)
               

               
               37-317, gnl|oryCun1|scaffold_177549 (54544-55137)
               

               
               37-317, gnl|panTro1|chr2 (145353520-145354111)
               

               
               37-317, gnl|rheMac2|chr2 (146233115-146232521)
               

               
               37-317, gnl|rn3|chr8 (101636021-101635467)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-317, gnl|bosTau2|chr1 (79487474-79487197)
               

               
               37-317, gnl|canFam2|chr23 (40561199-40561782)
               

               
               37-317, gnl|dasNov1|scaffold_3933 (56999-57579)
               

               
               37-317, gnl|echTel1|scaffold_80790 (5613-5074)
               

               
               37-317, gnl|galGal2|chr9 (3407833-3407240)
               

               
               37-317, gnl|hg17|chr3 (142814137-142814728)
               

               
               37-317, gnl|Hg17|chr3 (142814438-142814703)
               

               
               37-317, gnl|loxAfr1|scaffold_11908 (20481-19859)
               

               
               37-317, gnl|mm7|chr9 (96183800-96183251)
               

               
               37-317, gnl|Mm7|chr9 (96183525-96183272)
               

               
               37-317, gnl|monDom2|scaffold_28 (12239020-12239585)
               

               
               37-317, gnl|oryCun1|scaffold_177549 (54544-55137)
               

               
               37-317, gnl|panTro1|chr2 (145353520-145354111)
               

               
               37-317, gnl|rheMac2|chr2 (146233115-146232521)
               

               
               37-317, gnl|rn3|chr8 (101636021-101635467)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	37-154, + strand, RNAz p=0.610988
	194-313, - strand, RNAz p=0.576117

	37-317, gnl\|bosTau2\|chr1 (79487474-79487197)
	37-317, gnl\|canFam2\|chr23 (40561199-40561782)
	37-317, gnl\|dasNov1\|scaffold_3933 (56999-57579)
	37-317, gnl\|echTel1\|scaffold_80790 (5613-5074)
	37-317, gnl\|galGal2\|chr9 (3407833-3407240)
	37-317, gnl\|hg17\|chr3 (142814137-142814728)
	37-317, gnl\|Hg17\|chr3 (142814438-142814703)
	37-317, gnl\|loxAfr1\|scaffold_11908 (20481-19859)
	37-317, gnl\|mm7\|chr9 (96183800-96183251)
	37-317, gnl\|Mm7\|chr9 (96183525-96183272)
	37-317, gnl\|monDom2\|scaffold_28 (12239020-12239585)
	37-317, gnl\|oryCun1\|scaffold_177549 (54544-55137)
	37-317, gnl\|panTro1\|chr2 (145353520-145354111)
	37-317, gnl\|rheMac2\|chr2 (146233115-146232521)
	37-317, gnl\|rn3\|chr8 (101636021-101635467)