Non-Coding RNA Search

rjej38b_n3.y1

Sequence:


               
               CCCTCCTCCACTTCCCTTGTCCGTGACGCGGCGCCCTGGAGAAATCCGACGGGACCCGGG
CCGGGGGTGCGTGAGCTGCAGTTAAAAGAAGATGGATGCACAGAATTCAGCCAAAGTCAA
CACAAGGAAGAGGAGGAAAGAGGCACCTGGACCCAATGGGGCAGCAGAGGAAGATGGAAT
TCCTTCAAAAACACCACGCTGTGCAGTTGGCTTACGGGAGCCAGCGCCTTTTTCTGATGA
AATTGAGGTAGACTTTAGTAAGCCCTATGTCAGGGTCACTATGGAAGAAGCCAGCAGAGG
AACTTGTGAACGGCCTGTGAGAGTTTATGCAGATGGAATATTTGACTTATTTCATTCTGG
TCATGCCCGGGCTCTGATGCAAGCAAAGAACCTTTTCCCTAATACATACCTCATTGTGGG
AGTTTGCAGTGATGAGCTCACGCACAACTTCAAAGGCTTCACAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTCCACTTCCCTTGTCCGTGACGCGGCGCCCTGGAGAAATCCGACGGGACCCGGG
CCGGGGGTGCGTGAGCTGCAGTTAAAAGAAGATGGATGCACAGAATTCAGCCAAAGTCAA
CACAAGGAAGAGGAGGAAAGAGGCACCTGGACCCAATGGGGCAGCAGAGGAAGATGGAAT
TCCTTCAAAAACACCACGCTGTGCAGTTGGCTTACGGGAGCCAGCGCCTTTTTCTGATGA
AATTGAGGTAGACTTTAGTAAGCCCTATGTCAGGGTCACTATGGAAGAAGCCAGCAGAGG
AACTTGTGAACGGCCTGTGAGAGTTTATGCAGATGGAATATTTGACTTATTTCATTCTGG
TCATGCCCGGGCTCTGATGCAAGCAAAGAACCTTTTCCCTAATACATACCTCATTGTGGG
AGTTTGCAGTGATGAGCTCACGCACAACTTCAAAGGCTTCACAGTG

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               79-209, gnl|bosTau2|chr1 (42265984-42265854)
               

               
               79-209, gnl|canFam2|chr33 (32432357-32432966)
               

               
               79-209, gnl|dasNov1|scaffold_38531 (11974-11369)
               

               
               79-209, gnl|echTel1|scaffold_214706 (8539-9113)
               

               
               79-209, gnl|hg17|chr3 (197485361-197485942)
               

               
               79-209, gnl|Hg17|chr3 (197485725-197485595)
               

               
               79-209, gnl|loxAfr1|scaffold_19490 (20351-19735)
               

               
               79-209, gnl|mm7|chr16 (32126592-32126070)
               

               
               79-209, gnl|Mm7|chr16 (32126227-32126357)
               

               
               79-209, gnl|monDom2|scaffold_24 (25996347-25996890)
               

               
               79-209, gnl|panTro1|chr2 (201649073-201649654)
               

               
               79-209, gnl|rheMac2|chr2 (189167348-189166767)
               

               
               79-209, gnl|rn3|chr11 (70212198-70212687)
               


               
               306-422, gnl|bosTau2|chr1 (42247202-42247086)
               

               
               306-422, gnl|Hg17|chr3 (197463504-197463388)
               

               
               306-422, gnl|Mm7|chr16 (32136526-32136675)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-209, gnl|bosTau2|chr1 (42265984-42265854)
               

               
               79-209, gnl|canFam2|chr33 (32432357-32432966)
               

               
               79-209, gnl|dasNov1|scaffold_38531 (11974-11369)
               

               
               79-209, gnl|echTel1|scaffold_214706 (8539-9113)
               

               
               79-209, gnl|hg17|chr3 (197485361-197485942)
               

               
               79-209, gnl|Hg17|chr3 (197485725-197485595)
               

               
               79-209, gnl|loxAfr1|scaffold_19490 (20351-19735)
               

               
               79-209, gnl|mm7|chr16 (32126592-32126070)
               

               
               79-209, gnl|Mm7|chr16 (32126227-32126357)
               

               
               79-209, gnl|monDom2|scaffold_24 (25996347-25996890)
               

               
               79-209, gnl|panTro1|chr2 (201649073-201649654)
               

               
               79-209, gnl|rheMac2|chr2 (189167348-189166767)
               

               
               79-209, gnl|rn3|chr11 (70212198-70212687)
               


               
               306-422, gnl|bosTau2|chr1 (42247202-42247086)
               

               
               306-422, gnl|Hg17|chr3 (197463504-197463388)
               

               
               306-422, gnl|Mm7|chr16 (32136526-32136675)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	79-209, gnl\|bosTau2\|chr1 (42265984-42265854)
	79-209, gnl\|canFam2\|chr33 (32432357-32432966)
	79-209, gnl\|dasNov1\|scaffold_38531 (11974-11369)
	79-209, gnl\|echTel1\|scaffold_214706 (8539-9113)
	79-209, gnl\|hg17\|chr3 (197485361-197485942)
	79-209, gnl\|Hg17\|chr3 (197485725-197485595)
	79-209, gnl\|loxAfr1\|scaffold_19490 (20351-19735)
	79-209, gnl\|mm7\|chr16 (32126592-32126070)
	79-209, gnl\|Mm7\|chr16 (32126227-32126357)
	79-209, gnl\|monDom2\|scaffold_24 (25996347-25996890)
	79-209, gnl\|panTro1\|chr2 (201649073-201649654)
	79-209, gnl\|rheMac2\|chr2 (189167348-189166767)
	79-209, gnl\|rn3\|chr11 (70212198-70212687)

	306-422, gnl\|bosTau2\|chr1 (42247202-42247086)
	306-422, gnl\|Hg17\|chr3 (197463504-197463388)
	306-422, gnl\|Mm7\|chr16 (32136526-32136675)