Non-Coding RNA Search

rjej39b_e7.y1

Sequence:


               
               GCCGCAGAGAGGCGGAGGGGCTGGTGCAGCAGGTGGTGCGAGAAGCAGGCGCCGGTGGCC
CCCAGCTCGTGGCCCTGAAGCTGGAGATGGCCTCTTTGCCGGATCTGACATCCGCCATCA
ACAAGCTCTGTGGGGGCTCCAGGCAGACGCCTTGCACCGCAGGAGCATGCCCCGGCGAGC
TGTGTCCCCGAGACAATGGCACCACCTGTGGCTCCCAGTGCAAAGGTGCTCTCCCCAGGG
CAGGGGGCGCCTTCCGGACGGCAGGGCAGGTGGCCGAGCAGCTGCGGGGCTTCAACGTCC
AGCTCCACCAGACCAGACAGATGATCCAGGCGGTGGAGGAAGCCGCCTCGAAGGTGCAGG
CCGATGCTCGGCGCCTGGAGACGCAGGTGAGCGCCAGCCGCACGCGGATGGAGGAAGATG
TCAGCCGCACGCAGTTCCTCACCCAGCAGGTCCGGGACTTCCTCTCAGACCCTGACACTG
ACGCGGCCACCATCCAGGAGGTCAGCGAGGCCGTGCTGGCCCTGTGGCTGCCCACGGACT
CGGCCACGGTCCTGCGGAAGATGAACGAGATCCAGGCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCAGAGAGGCGGAGGGGCTGGTGCAGCAGGTGGTGCGAGAAGCAGGCGCCGGTGGCC
CCCAGCTCGTGGCCCTGAAGCTGGAGATGGCCTCTTTGCCGGATCTGACATCCGCCATCA
ACAAGCTCTGTGGGGGCTCCAGGCAGACGCCTTGCACCGCAGGAGCATGCCCCGGCGAGC
TGTGTCCCCGAGACAATGGCACCACCTGTGGCTCCCAGTGCAAAGGTGCTCTCCCCAGGG
CAGGGGGCGCCTTCCGGACGGCAGGGCAGGTGGCCGAGCAGCTGCGGGGCTTCAACGTCC
AGCTCCACCAGACCAGACAGATGATCCAGGCGGTGGAGGAAGCCGCCTCGAAGGTGCAGG
CCGATGCTCGGCGCCTGGAGACGCAGGTGAGCGCCAGCCGCACGCGGATGGAGGAAGATG
TCAGCCGCACGCAGTTCCTCACCCAGCAGGTCCGGGACTTCCTCTCAGACCCTGACACTG
ACGCGGCCACCATCCAGGAGGTCAGCGAGGCCGTGCTGGCCCTGTGGCTGCCCACGGACT
CGGCCACGGTCCTGCGGAAGATGAACGAGATCCAGGCCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|40019119|gb|AAR37032.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|40019119|gb|AAR37032.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               124-242, + strand, RNAz p=0.938793

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-242, + strand, RNAz p=0.938793

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               124-323, gnl|bosTau2|chr16 (50649236-50649037)
               

               
               124-323, gnl|Hg17|chr1 (206184921-206184722)
               

               
               124-323, gnl|Mm7|chr1 (192887499-192887698)
               


               
               466-580, gnl|bosTau2|chr16 (50644642-50644528)
               

               
               466-580, gnl|Hg17|chr1 (206180402-206180288)
               

               
               466-580, gnl|Mm7|chr1 (192891455-192891569)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-323, gnl|bosTau2|chr16 (50649236-50649037)
               

               
               124-323, gnl|Hg17|chr1 (206184921-206184722)
               

               
               124-323, gnl|Mm7|chr1 (192887499-192887698)
               


               
               466-580, gnl|bosTau2|chr16 (50644642-50644528)
               

               
               466-580, gnl|Hg17|chr1 (206180402-206180288)
               

               
               466-580, gnl|Mm7|chr1 (192891455-192891569)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	124-323, gnl\|bosTau2\|chr16 (50649236-50649037)
	124-323, gnl\|Hg17\|chr1 (206184921-206184722)
	124-323, gnl\|Mm7\|chr1 (192887499-192887698)

	466-580, gnl\|bosTau2\|chr16 (50644642-50644528)
	466-580, gnl\|Hg17\|chr1 (206180402-206180288)
	466-580, gnl\|Mm7\|chr1 (192891455-192891569)