Non-Coding RNA Search

rjej40b_l12.y1

Sequence:


               
               ACTCCCAGTCAGTGTCCCCCTGGTGGCAGCAGATGCGTGCAGCCTGCATCCAGTCTGAGA
ACAGCGGGGCTGCCCTGCTGTCGGCGCACGTCGGGCACGCCGTGGCCGTGCAGATATCCA
ACAGCCTGACCGAGAAGAAGTTTTCGCAGGTGGGTCTGGGTCCCGACTCGGAGGCGCTCA
CCGATTCCTGGGAGGCCCTCTCTCTCGACACCGAGTACTGGAAGCTCCTGCTGAAGCAGC
TGGAGGACTGCCTCCTGCTCCAGACGCTGCTGCACAGCAGAGTGAACCCCTCAACCGCCA
GGGGGTCTTCACTGCAGGCTGAGCCGCTCCCAAGGCTCTCGGTTAAGAAGCTCTTAGAGG
GCGGAAGAGGTGGCATTGCAGACAGTGTAGCCAAGTGGATATTTAAACAGGACTTAAGTC
CTGAAGTTTTAAAATGGGCTAATAAAGAAAGAGATGCAGAAAACCCAGACGAACCCAAAG
AAGGTAGCAGCAGAGGTTTATCCGAGATGACGGAGGTGGAGACGGACCTGGGAGCCATAC
CAGACTTGCTGCACTTGGCCTACACGCAGTTCCCCTGCAGCCTGGAGTTGGACGTGCTGC
ACGCGCACTGCTGCTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCCAGTCAGTGTCCCCCTGGTGGCAGCAGATGCGTGCAGCCTGCATCCAGTCTGAGA
ACAGCGGGGCTGCCCTGCTGTCGGCGCACGTCGGGCACGCCGTGGCCGTGCAGATATCCA
ACAGCCTGACCGAGAAGAAGTTTTCGCAGGTGGGTCTGGGTCCCGACTCGGAGGCGCTCA
CCGATTCCTGGGAGGCCCTCTCTCTCGACACCGAGTACTGGAAGCTCCTGCTGAAGCAGC
TGGAGGACTGCCTCCTGCTCCAGACGCTGCTGCACAGCAGAGTGAACCCCTCAACCGCCA
GGGGGTCTTCACTGCAGGCTGAGCCGCTCCCAAGGCTCTCGGTTAAGAAGCTCTTAGAGG
GCGGAAGAGGTGGCATTGCAGACAGTGTAGCCAAGTGGATATTTAAACAGGACTTAAGTC
CTGAAGTTTTAAAATGGGCTAATAAAGAAAGAGATGCAGAAAACCCAGACGAACCCAAAG
AAGGTAGCAGCAGAGGTTTATCCGAGATGACGGAGGTGGAGACGGACCTGGGAGCCATAC
CAGACTTGCTGCACTTGGCCTACACGCAGTTCCCCTGCAGCCTGGAGTTGGACGTGCTGC
ACGCGCACTGCTGCTGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-334, - strand, RNAz p=0.96932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-334, - strand, RNAz p=0.96932

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               139-371, gnl|bosTau2|chr16 (11384781-11385013)
               

               
               139-371, gnl|canFam2|chr38 (17945380-17945572)
               

               
               139-371, gnl|danRer3|chr17 (1314183-1314018)
               

               
               139-371, gnl|echTel1|scaffold_286232 (5053-4861)
               

               
               139-371, gnl|fr1|chrUn (183051753-183051582)
               

               
               139-371, gnl|galGal2|chr3 (15109309-15109121)
               

               
               139-371, gnl|hg17|chr1 (216732619-216732811)
               

               
               139-371, gnl|Hg17|chr1 (216732859-216732627)
               

               
               139-371, gnl|loxAfr1|scaffold_30097 (3667-3859)
               

               
               139-371, gnl|mm7|chr1 (184789450-184789258)
               

               
               139-371, gnl|Mm7|chr1 (184789208-184789440)
               

               
               139-371, gnl|monDom2|scaffold_13 (26339840-26340032)
               

               
               139-371, gnl|oryCun1|scaffold_197482 (21664-21472)
               

               
               139-371, gnl|panTro1|chr1 (200460911-200461103)
               

               
               139-371, gnl|rheMac2|chr1 (150192123-150191931)
               

               
               139-371, gnl|rn3|chr13 (101462198-101462006)
               

               
               139-371, gnl|tetNig1|chrUn_random (116267360-116267534)
               

               
               139-371, gnl|xenTro1|scaffold_39 (2673604-2673790)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-371, gnl|bosTau2|chr16 (11384781-11385013)
               

               
               139-371, gnl|canFam2|chr38 (17945380-17945572)
               

               
               139-371, gnl|danRer3|chr17 (1314183-1314018)
               

               
               139-371, gnl|echTel1|scaffold_286232 (5053-4861)
               

               
               139-371, gnl|fr1|chrUn (183051753-183051582)
               

               
               139-371, gnl|galGal2|chr3 (15109309-15109121)
               

               
               139-371, gnl|hg17|chr1 (216732619-216732811)
               

               
               139-371, gnl|Hg17|chr1 (216732859-216732627)
               

               
               139-371, gnl|loxAfr1|scaffold_30097 (3667-3859)
               

               
               139-371, gnl|mm7|chr1 (184789450-184789258)
               

               
               139-371, gnl|Mm7|chr1 (184789208-184789440)
               

               
               139-371, gnl|monDom2|scaffold_13 (26339840-26340032)
               

               
               139-371, gnl|oryCun1|scaffold_197482 (21664-21472)
               

               
               139-371, gnl|panTro1|chr1 (200460911-200461103)
               

               
               139-371, gnl|rheMac2|chr1 (150192123-150191931)
               

               
               139-371, gnl|rn3|chr13 (101462198-101462006)
               

               
               139-371, gnl|tetNig1|chrUn_random (116267360-116267534)
               

               
               139-371, gnl|xenTro1|scaffold_39 (2673604-2673790)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	139-371, gnl\|bosTau2\|chr16 (11384781-11385013)
	139-371, gnl\|canFam2\|chr38 (17945380-17945572)
	139-371, gnl\|danRer3\|chr17 (1314183-1314018)
	139-371, gnl\|echTel1\|scaffold_286232 (5053-4861)
	139-371, gnl\|fr1\|chrUn (183051753-183051582)
	139-371, gnl\|galGal2\|chr3 (15109309-15109121)
	139-371, gnl\|hg17\|chr1 (216732619-216732811)
	139-371, gnl\|Hg17\|chr1 (216732859-216732627)
	139-371, gnl\|loxAfr1\|scaffold_30097 (3667-3859)
	139-371, gnl\|mm7\|chr1 (184789450-184789258)
	139-371, gnl\|Mm7\|chr1 (184789208-184789440)
	139-371, gnl\|monDom2\|scaffold_13 (26339840-26340032)
	139-371, gnl\|oryCun1\|scaffold_197482 (21664-21472)
	139-371, gnl\|panTro1\|chr1 (200460911-200461103)
	139-371, gnl\|rheMac2\|chr1 (150192123-150191931)
	139-371, gnl\|rn3\|chr13 (101462198-101462006)
	139-371, gnl\|tetNig1\|chrUn_random (116267360-116267534)
	139-371, gnl\|xenTro1\|scaffold_39 (2673604-2673790)