Non-Coding RNA Search

rlin10_c22r1.y1

Sequence:


               
               AGTCACTCAACTCTAATTAGACCTTTGAATGAATCCTTCTTTACATGTTTCCAGGAAATC
TCTAAAGCCAGCAAAGAGAATAGAAATGTCACCCTCAGAAGCCCAACATCGTCAAGGGCT
AGGAGGTGCACAAAAATGGATTTTTTGGTGTGTCTACTAATGATTAAGTCTATGAAAGAA
AAAGTTTTTTTTTTTTGGTTTGTTTTTGGGCTGGACATTTTTAAAAGGTGCAGCATGGGA
GCCAATCAATATTACAAGCAAATTTGATCCTACCTAGAACTGGGATGAGAAACCAAATGA
GAATAGTACAACCTTGTTAAGCCTGGCACCTTGGCAGATAACTGAAGTGTGTTTTTGTCT
TCCTGATGGGGATATTGATTTCTGAGCAGCAAATACGGCTCCATAGTTTCTTTCTTAAGA
AAGAAAATTATGGGTATCTTGATTATGATTTAAGTTTTTGTGGCTTGAGATCAATATCAC
CTCGCATTGAAAAAATGAAATGCTTATTGTGGGGAAACCAGAAAGATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCACTCAACTCTAATTAGACCTTTGAATGAATCCTTCTTTACATGTTTCCAGGAAATC
TCTAAAGCCAGCAAAGAGAATAGAAATGTCACCCTCAGAAGCCCAACATCGTCAAGGGCT
AGGAGGTGCACAAAAATGGATTTTTTGGTGTGTCTACTAATGATTAAGTCTATGAAAGAA
AAAGTTTTTTTTTTTTGGTTTGTTTTTGGGCTGGACATTTTTAAAAGGTGCAGCATGGGA
GCCAATCAATATTACAAGCAAATTTGATCCTACCTAGAACTGGGATGAGAAACCAAATGA
GAATAGTACAACCTTGTTAAGCCTGGCACCTTGGCAGATAACTGAAGTGTGTTTTTGTCT
TCCTGATGGGGATATTGATTTCTGAGCAGCAAATACGGCTCCATAGTTTCTTTCTTAAGA
AAGAAAATTATGGGTATCTTGATTATGATTTAAGTTTTTGTGGCTTGAGATCAATATCAC
CTCGCATTGAAAAAATGAAATGCTTATTGTGGGGAAACCAGAAAGATCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               394-508, + strand, RNAz p=0.585774

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-508, + strand, RNAz p=0.585774

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-528, gnl|bosTau2|chr17 (12460297-12459784)
               

               
               1-528, gnl|Hg17|chr4 (140999975-141000496)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr17 (12460297-12459784)
               

               
               1-528, gnl|Hg17|chr4 (140999975-141000496)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-528, gnl\|bosTau2\|chr17 (12460297-12459784)
	1-528, gnl\|Hg17\|chr4 (140999975-141000496)