Non-Coding RNA Search

rlin14_k20.y1

Sequence:


               
               CTATTCGGGAGCCATTTTCTTTCTTGCCTGTGACTTAAAATGACTAAGTACATTTTGAAT
ATAGCGTCAATCAGAAGATCGTAAACTGAAGGAAATGTCAGAAACTTGATTCAGTATTGC
CTATTTATTTTAGTACCAGTAGCATTCACAGTTGCAGGAGGATCAAGCTAATTGTCATTC
GCTCTTGAGCAAATAATGAGCCCGGCATTTGTAATTAAAACACTATTGCTATTCGGAAAG
ATTACAACTCAATGTCTTCTATTTTGATAGGCCGGTACAAATTAATCATTTTGAGCCCAT
TTGAATCTTAATCACAAGATTAGATGGATGCGATGGAATTGTTTTACCCTATAAATGAAT
GCCTGAGAGATTCAACAGTGTATTTCTTCCTTGTAAAATGTCGATCCTTTTGTTTTTAAC
TCAAGCATGGTTGCGTCATCTTGTAGATTTTCATACCTCATGATTTTTTGGAGGCATTAT
TCACTTATGTTGTTCTTGGTCTCTCGGAAAAGAATTTTAAACACAATTCAAGGAGCTTGA
AAGCCAAATAAGACTGTTGGGAAGTATATTGTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTCGGGAGCCATTTTCTTTCTTGCCTGTGACTTAAAATGACTAAGTACATTTTGAAT
ATAGCGTCAATCAGAAGATCGTAAACTGAAGGAAATGTCAGAAACTTGATTCAGTATTGC
CTATTTATTTTAGTACCAGTAGCATTCACAGTTGCAGGAGGATCAAGCTAATTGTCATTC
GCTCTTGAGCAAATAATGAGCCCGGCATTTGTAATTAAAACACTATTGCTATTCGGAAAG
ATTACAACTCAATGTCTTCTATTTTGATAGGCCGGTACAAATTAATCATTTTGAGCCCAT
TTGAATCTTAATCACAAGATTAGATGGATGCGATGGAATTGTTTTACCCTATAAATGAAT
GCCTGAGAGATTCAACAGTGTATTTCTTCCTTGTAAAATGTCGATCCTTTTGTTTTTAAC
TCAAGCATGGTTGCGTCATCTTGTAGATTTTCATACCTCATGATTTTTTGGAGGCATTAT
TCACTTATGTTGTTCTTGGTCTCTCGGAAAAGAATTTTAAACACAATTCAAGGAGCTTGA
AAGCCAAATAAGACTGTTGGGAAGTATATTGTACC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-573, gnl|bosTau2|chr1 (79728791-79728218)
               

               
               1-573, gnl|canFam2|chr23 (40341300-40341849)
               

               
               1-573, gnl|echTel1|scaffold_309432 (10675-10137)
               

               
               1-573, gnl|galGal2|chr9 (3470358-3469796)
               

               
               1-573, gnl|hg17|chr3 (142590990-142591530)
               

               
               1-573, gnl|Hg17|chr3 (142591010-142591585)
               

               
               1-573, gnl|loxAfr1|scaffold_2932 (80339-79758)
               

               
               1-573, gnl|mm7|chr9 (96371402-96370873)
               

               
               1-573, gnl|Mm7|chr9 (96371374-96370815)
               

               
               1-573, gnl|monDom2|scaffold_28 (11978810-11979362)
               

               
               1-573, gnl|oryCun1|scaffold_210516 (89951-89458)
               

               
               1-573, gnl|panTro1|chr2 (145127061-145127607)
               

               
               1-573, gnl|rheMac2|chr2 (146457409-146456877)
               

               
               1-573, gnl|rn3|chr8 (101845355-101844804)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr1 (79728791-79728218)
               

               
               1-573, gnl|canFam2|chr23 (40341300-40341849)
               

               
               1-573, gnl|echTel1|scaffold_309432 (10675-10137)
               

               
               1-573, gnl|galGal2|chr9 (3470358-3469796)
               

               
               1-573, gnl|hg17|chr3 (142590990-142591530)
               

               
               1-573, gnl|Hg17|chr3 (142591010-142591585)
               

               
               1-573, gnl|loxAfr1|scaffold_2932 (80339-79758)
               

               
               1-573, gnl|mm7|chr9 (96371402-96370873)
               

               
               1-573, gnl|Mm7|chr9 (96371374-96370815)
               

               
               1-573, gnl|monDom2|scaffold_28 (11978810-11979362)
               

               
               1-573, gnl|oryCun1|scaffold_210516 (89951-89458)
               

               
               1-573, gnl|panTro1|chr2 (145127061-145127607)
               

               
               1-573, gnl|rheMac2|chr2 (146457409-146456877)
               

               
               1-573, gnl|rn3|chr8 (101845355-101844804)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lin (0.145603)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-573, gnl\|bosTau2\|chr1 (79728791-79728218)
	1-573, gnl\|canFam2\|chr23 (40341300-40341849)
	1-573, gnl\|echTel1\|scaffold_309432 (10675-10137)
	1-573, gnl\|galGal2\|chr9 (3470358-3469796)
	1-573, gnl\|hg17\|chr3 (142590990-142591530)
	1-573, gnl\|Hg17\|chr3 (142591010-142591585)
	1-573, gnl\|loxAfr1\|scaffold_2932 (80339-79758)
	1-573, gnl\|mm7\|chr9 (96371402-96370873)
	1-573, gnl\|Mm7\|chr9 (96371374-96370815)
	1-573, gnl\|monDom2\|scaffold_28 (11978810-11979362)
	1-573, gnl\|oryCun1\|scaffold_210516 (89951-89458)
	1-573, gnl\|panTro1\|chr2 (145127061-145127607)
	1-573, gnl\|rheMac2\|chr2 (146457409-146456877)
	1-573, gnl\|rn3\|chr8 (101845355-101844804)