Non-Coding RNA Search

rlin15_j1.y1

Sequence:


               
               TGGATGTTTGAGCTTTGACAATTTTTACCAGTATATATTGGTTTTATTTAAAGCTGGGAG
TCCAGTTTATAAATAGAATAGTTGGTATATCTGCCCTTTCCCCCCTGTAAAGAATAGTTA
AAAGGTTTACGCATACTTTTTCTTTTTCTCTCTTGATGCCATGGAGTAGGGTGGGTGGGA
TGGGGGGAGATCTTTGAGTCAACAACTGACAGAAATGTCTTCAAATTTAAAAATTGAGAA
TCAGCACCTTATTTAAGTCTAACTGTACACCATTTTAGTGCATGTTATTAGTTTTAATGA
TTTTTTGGTGCATGCCTTTGGGCTTATTCAAAAGTGTACAATAGGAAAGTATATGTATTT
CCTTTCTTAGAAAGGAGATGTTTTTCTACTTTGCAACATGTGATTACAAAATCTTCCTCT
GTGGGAAGATTAACCATGTATTGAACTACTGAAAAGTATATATTTTTAGATATACAGAAG
GAATCTACATGGAGCAGCATTCAGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATGTTTGAGCTTTGACAATTTTTACCAGTATATATTGGTTTTATTTAAAGCTGGGAG
TCCAGTTTATAAATAGAATAGTTGGTATATCTGCCCTTTCCCCCCTGTAAAGAATAGTTA
AAAGGTTTACGCATACTTTTTCTTTTTCTCTCTTGATGCCATGGAGTAGGGTGGGTGGGA
TGGGGGGAGATCTTTGAGTCAACAACTGACAGAAATGTCTTCAAATTTAAAAATTGAGAA
TCAGCACCTTATTTAAGTCTAACTGTACACCATTTTAGTGCATGTTATTAGTTTTAATGA
TTTTTTGGTGCATGCCTTTGGGCTTATTCAAAAGTGTACAATAGGAAAGTATATGTATTT
CCTTTCTTAGAAAGGAGATGTTTTTCTACTTTGCAACATGTGATTACAAAATCTTCCTCT
GTGGGAAGATTAACCATGTATTGAACTACTGAAAAGTATATATTTTTAGATATACAGAAG
GAATCTACATGGAGCAGCATTCAGACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.870742
               

               
               273-507, + strand, RNAz p=0.983725

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.870742
               

               
               273-507, + strand, RNAz p=0.983725

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               251-412, + strand, RNAmicro p=0.995968

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               251-412, + strand, RNAmicro p=0.995968

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-507, gnl|bosTau2|chr7 (29542675-29542165)
               

               
               1-507, gnl|Hg17|chr5 (139485522-139486025)
               

               
               1-507, gnl|Mm7|chr18 (36674613-36675100)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-507, gnl|bosTau2|chr7 (29542675-29542165)
               

               
               1-507, gnl|Hg17|chr5 (139485522-139486025)
               

               
               1-507, gnl|Mm7|chr18 (36674613-36675100)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-118, - strand, RNAz p=0.870742
	273-507, + strand, RNAz p=0.983725

	1-507, gnl\|bosTau2\|chr7 (29542675-29542165)
	1-507, gnl\|Hg17\|chr5 (139485522-139486025)
	1-507, gnl\|Mm7\|chr18 (36674613-36675100)