Non-Coding RNA Search

rlin18_a7r1.y1

Sequence:


               
               GAAAGTTATATTTGCCTGAGTGTGTAAACAAATATGCCTCTTCAAGTATGGCTTTAGGGA
TATTGGTGAGTTGTCTGAGTATTAATACAGTCTATTTGATGTCAAAGGTAACTTGTTAAT
TTTCTGGGAGCTTATACTCAGTAAAAGTAAAAGCAGTTATAGAACATTGATTCGTATATC
TTCCACCCATTGTTTTAGGGTATTAACACAAAGTTAACATTGTTTTAGGGTATTAACACA
AAGTTAACAAACAATTTGAGAAGTTCTGTCAAAGCAACCTGAAACATCTGTAAAAAGAGA
AAATAGTTATCTTAATATATTAGTGTTTATAGAATATATGTAAATAGAAGCTATATGTAA
TAATGCACTACTACACTACTTCTCTGATTAAAGTATTCACAGTTGGTGAACTTAAGATGG
AAATCATGCCTTTTAGAATTGTTACTTTGCCTTTTAATCTCTTGGATCCTGAAGTTTTCT
TTTTTCCTCTTAAAACATTTCAATTATTGTTACTTTCAGGAGAAATAATTAAGATCTTTA
AGATTCCAGTAGCAATAGCTTTTAGGTACTAAATTATATGAGTGCTTACTTTTATTTTAT
TACATTACAAGAGCCTCAAATACTTTCAAAAATTATATGAATTTAGAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGTTATATTTGCCTGAGTGTGTAAACAAATATGCCTCTTCAAGTATGGCTTTAGGGA
TATTGGTGAGTTGTCTGAGTATTAATACAGTCTATTTGATGTCAAAGGTAACTTGTTAAT
TTTCTGGGAGCTTATACTCAGTAAAAGTAAAAGCAGTTATAGAACATTGATTCGTATATC
TTCCACCCATTGTTTTAGGGTATTAACACAAAGTTAACATTGTTTTAGGGTATTAACACA
AAGTTAACAAACAATTTGAGAAGTTCTGTCAAAGCAACCTGAAACATCTGTAAAAAGAGA
AAATAGTTATCTTAATATATTAGTGTTTATAGAATATATGTAAATAGAAGCTATATGTAA
TAATGCACTACTACACTACTTCTCTGATTAAAGTATTCACAGTTGGTGAACTTAAGATGG
AAATCATGCCTTTTAGAATTGTTACTTTGCCTTTTAATCTCTTGGATCCTGAAGTTTTCT
TTTTTCCTCTTAAAACATTTCAATTATTGTTACTTTCAGGAGAAATAATTAAGATCTTTA
AGATTCCAGTAGCAATAGCTTTTAGGTACTAAATTATATGAGTGCTTACTTTTATTTTAT
TACATTACAAGAGCCTCAAATACTTTCAAAAATTATATGAATTTAGAAAACA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-219, gnl|bosTau2|chr1 (9986449-9986665)
               

               
               1-219, gnl|canFam2|chr23 (54553246-54553913)
               

               
               1-219, gnl|dasNov1|scaffold_20203 (3632-2969)
               

               
               1-219, gnl|echTel1|scaffold_281727 (5996-5415)
               

               
               1-219, gnl|hg17|chr3 (159308221-159308849)
               

               
               1-219, gnl|Hg17|chr3 (159308363-159308574)
               

               
               1-219, gnl|loxAfr1|scaffold_4171 (50645-50012)
               

               
               1-219, gnl|mm7|chr3 (67084214-67084844)
               

               
               1-219, gnl|Mm7|chr3 (67084348-67084567)
               

               
               1-219, gnl|oryCun1|scaffold_212588 (1656-1017)
               

               
               1-219, gnl|panTro1|chr2 (162480068-162480698)
               

               
               1-219, gnl|rheMac2|chr2 (129566956-129566327)
               

               
               1-219, gnl|rn3|chr2 (156841307-156841937)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr1 (9986449-9986665)
               

               
               1-219, gnl|canFam2|chr23 (54553246-54553913)
               

               
               1-219, gnl|dasNov1|scaffold_20203 (3632-2969)
               

               
               1-219, gnl|echTel1|scaffold_281727 (5996-5415)
               

               
               1-219, gnl|hg17|chr3 (159308221-159308849)
               

               
               1-219, gnl|Hg17|chr3 (159308363-159308574)
               

               
               1-219, gnl|loxAfr1|scaffold_4171 (50645-50012)
               

               
               1-219, gnl|mm7|chr3 (67084214-67084844)
               

               
               1-219, gnl|Mm7|chr3 (67084348-67084567)
               

               
               1-219, gnl|oryCun1|scaffold_212588 (1656-1017)
               

               
               1-219, gnl|panTro1|chr2 (162480068-162480698)
               

               
               1-219, gnl|rheMac2|chr2 (129566956-129566327)
               

               
               1-219, gnl|rn3|chr2 (156841307-156841937)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lin (0.145603)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-219, gnl\|bosTau2\|chr1 (9986449-9986665)
	1-219, gnl\|canFam2\|chr23 (54553246-54553913)
	1-219, gnl\|dasNov1\|scaffold_20203 (3632-2969)
	1-219, gnl\|echTel1\|scaffold_281727 (5996-5415)
	1-219, gnl\|hg17\|chr3 (159308221-159308849)
	1-219, gnl\|Hg17\|chr3 (159308363-159308574)
	1-219, gnl\|loxAfr1\|scaffold_4171 (50645-50012)
	1-219, gnl\|mm7\|chr3 (67084214-67084844)
	1-219, gnl\|Mm7\|chr3 (67084348-67084567)
	1-219, gnl\|oryCun1\|scaffold_212588 (1656-1017)
	1-219, gnl\|panTro1\|chr2 (162480068-162480698)
	1-219, gnl\|rheMac2\|chr2 (129566956-129566327)
	1-219, gnl\|rn3\|chr2 (156841307-156841937)