Non-Coding RNA Search

rlin19_e22.y1

Sequence:


               
               GTCACTGTACTGGTGACTTCACTCCTCATTTCGATGCTATCAAGTGTCCCGTATGGTACA
ATTTTCTGCTTAGTTATAATCATCATCGCCTGGAAGAACATGAAGCAGAAACCTATGAAG
ACAGTTTTACTGGAAATCCAAGTTCTCCTTCACAGATACAAGATACAAACTCTGAAGAAA
CTACAGTAATATTTGAACAACTGCACTCATTTGTGGTAGATGATGATGGGTTTATTGAAG
ACAAATATATAGATACTCATGAATTACATGAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACTGTACTGGTGACTTCACTCCTCATTTCGATGCTATCAAGTGTCCCGTATGGTACA
ATTTTCTGCTTAGTTATAATCATCATCGCCTGGAAGAACATGAAGCAGAAACCTATGAAG
ACAGTTTTACTGGAAATCCAAGTTCTCCTTCACAGATACAAGATACAAACTCTGAAGAAA
CTACAGTAATATTTGAACAACTGCACTCATTTGTGGTAGATGATGATGGGTTTATTGAAG
ACAAATATATAGATACTCATGAATTACATGAAGAAAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-277, gnl|bosTau2|chr8 (10624293-10624570)
               

               
               1-277, gnl|canFam2|chr11 (48212548-48213086)
               

               
               1-277, gnl|dasNov1|scaffold_82136 (7109-6602)
               

               
               1-277, gnl|galGal2|chrZ_random (2631520-2632006)
               

               
               1-277, gnl|hg17|chr9 (26985399-26985903)
               

               
               1-277, gnl|Hg17|chr9 (26985800-26985523)
               

               
               1-277, gnl|loxAfr1|scaffold_16482 (62-561)
               

               
               1-277, gnl|mm7|chr4 (94030714-94031197)
               

               
               1-277, gnl|Mm7|chr4 (94031111-94030834)
               

               
               1-277, gnl|monDom2|scaffold_19 (24833269-24833761)
               

               
               1-277, gnl|oryCun1|scaffold_161791 (7028-6543)
               

               
               1-277, gnl|panTro1|chr11 (27515645-27516154)
               

               
               1-277, gnl|rheMac2|chr15 (50108886-50108381)
               

               
               1-277, gnl|rn3|chr5 (114942758-114943225)
               

               
               1-277, gnl|xenTro1|scaffold_155 (893032-892571)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr8 (10624293-10624570)
               

               
               1-277, gnl|canFam2|chr11 (48212548-48213086)
               

               
               1-277, gnl|dasNov1|scaffold_82136 (7109-6602)
               

               
               1-277, gnl|galGal2|chrZ_random (2631520-2632006)
               

               
               1-277, gnl|hg17|chr9 (26985399-26985903)
               

               
               1-277, gnl|Hg17|chr9 (26985800-26985523)
               

               
               1-277, gnl|loxAfr1|scaffold_16482 (62-561)
               

               
               1-277, gnl|mm7|chr4 (94030714-94031197)
               

               
               1-277, gnl|Mm7|chr4 (94031111-94030834)
               

               
               1-277, gnl|monDom2|scaffold_19 (24833269-24833761)
               

               
               1-277, gnl|oryCun1|scaffold_161791 (7028-6543)
               

               
               1-277, gnl|panTro1|chr11 (27515645-27516154)
               

               
               1-277, gnl|rheMac2|chr15 (50108886-50108381)
               

               
               1-277, gnl|rn3|chr5 (114942758-114943225)
               

               
               1-277, gnl|xenTro1|scaffold_155 (893032-892571)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lin (0.145603)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-277, gnl\|bosTau2\|chr8 (10624293-10624570)
	1-277, gnl\|canFam2\|chr11 (48212548-48213086)
	1-277, gnl\|dasNov1\|scaffold_82136 (7109-6602)
	1-277, gnl\|galGal2\|chrZ_random (2631520-2632006)
	1-277, gnl\|hg17\|chr9 (26985399-26985903)
	1-277, gnl\|Hg17\|chr9 (26985800-26985523)
	1-277, gnl\|loxAfr1\|scaffold_16482 (62-561)
	1-277, gnl\|mm7\|chr4 (94030714-94031197)
	1-277, gnl\|Mm7\|chr4 (94031111-94030834)
	1-277, gnl\|monDom2\|scaffold_19 (24833269-24833761)
	1-277, gnl\|oryCun1\|scaffold_161791 (7028-6543)
	1-277, gnl\|panTro1\|chr11 (27515645-27516154)
	1-277, gnl\|rheMac2\|chr15 (50108886-50108381)
	1-277, gnl\|rn3\|chr5 (114942758-114943225)
	1-277, gnl\|xenTro1\|scaffold_155 (893032-892571)