rlin23_o22.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ttttttttttttttttttttttttttttttttttttttttttCATTTAAATGCCTTTTTT AATAATTTCTTCATGTTCACAGAAGTTTCACTGACCATTTTTTTATGTTTAAGGTCCAGA TGCAATGCATATTGTATAAAAGAGAGCACTTATTGTTTACCTTGCATGAATTAAACCTAC GTACCTTTAACTCTACAAACTTCTGCATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ttttttttttttttttttttttttttttttttttttttttttCATTTAAATGCCTTTTTT AATAATTTCTTCATGTTCACAGAAGTTTCACTGACCATTTTTTTATGTTTAAGGTCCAGA TGCAATGCATATTGTATAAAAGAGAGCACTTATTGTTTACCTTGCATGAATTAAACCTAC GTACCTTTAACTCTACAAACTTCTGCATAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-158, - strand, RNAz p=0.517379 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-158, - strand, RNAz p=0.517379 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005859, - |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 40-210, gnl|bosTau2|chr7 (29552551-29552720) | |
| 40-210, gnl|canFam2|chr2 (38183455-38183038) | |
| 40-210, gnl|canFam2|chr2 (38183261-38183392) | |
| 40-210, gnl|dasNov1|scaffold_19245 (4477-4894) | |
| 40-210, gnl|dasNov1|scaffold_19245 (4673-4542) | |
| 40-210, gnl|galGal2|chr13 (688382-687953) | |
| 40-210, gnl|galGal2|chr13 (688183-688315) | |
| 40-210, gnl|hg17|chr5 (139475548-139475679) | |
| 40-210, gnl|Hg17|chr5 (139475743-139475573) | |
| 40-210, gnl|hg17|chr7 (122158720-122159146) | |
| 40-210, gnl|loxAfr1|scaffold_16884 (34291-34709) | |
| 40-210, gnl|loxAfr1|scaffold_16884 (34487-34356) | |
| 40-210, gnl|mm7|chr18 (36665058-36664638) | |
| 40-210, gnl|mm7|chr18 (36664863-36664994) | |
| 40-210, gnl|Mm7|chr18 (36665057-36664888) | |
| 40-210, gnl|monDom2|scaffold_6 (68732036-68732464) | |
| 40-210, gnl|monDom2|scaffold_6 (68732232-68732101) | |
| 40-210, gnl|oryCun1|scaffold_206478 (42409-42827) | |
| 40-210, gnl|oryCun1|scaffold_206478 (42605-42474) | |
| 40-210, gnl|panTro1|chr4 (146091915-146092041) | |
| 40-210, gnl|panTro1|chr6 (124506711-124507131) | |
| 40-210, gnl|rheMac2|chr3 (160444105-160444520) | |
| 40-210, gnl|rheMac2|chr6 (136532598-136532729) | |
| 40-210, gnl|rn3|chr18 (28950785-28950366) | |
| 40-210, gnl|rn3|chr18 (28950590-28950721) | |
| 40-210, gnl|xenTro1|scaffold_15 (364662-365135) | |
| 40-210, gnl|xenTro1|scaffold_15 (364867-364727) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-210, gnl|bosTau2|chr7 (29552551-29552720) | |
| 40-210, gnl|canFam2|chr2 (38183455-38183038) | |
| 40-210, gnl|canFam2|chr2 (38183261-38183392) | |
| 40-210, gnl|dasNov1|scaffold_19245 (4477-4894) | |
| 40-210, gnl|dasNov1|scaffold_19245 (4673-4542) | |
| 40-210, gnl|galGal2|chr13 (688382-687953) | |
| 40-210, gnl|galGal2|chr13 (688183-688315) | |
| 40-210, gnl|hg17|chr5 (139475548-139475679) | |
| 40-210, gnl|Hg17|chr5 (139475743-139475573) | |
| 40-210, gnl|hg17|chr7 (122158720-122159146) | |
| 40-210, gnl|loxAfr1|scaffold_16884 (34291-34709) | |
| 40-210, gnl|loxAfr1|scaffold_16884 (34487-34356) | |
| 40-210, gnl|mm7|chr18 (36665058-36664638) | |
| 40-210, gnl|mm7|chr18 (36664863-36664994) | |
| 40-210, gnl|Mm7|chr18 (36665057-36664888) | |
| 40-210, gnl|monDom2|scaffold_6 (68732036-68732464) | |
| 40-210, gnl|monDom2|scaffold_6 (68732232-68732101) | |
| 40-210, gnl|oryCun1|scaffold_206478 (42409-42827) | |
| 40-210, gnl|oryCun1|scaffold_206478 (42605-42474) | |
| 40-210, gnl|panTro1|chr4 (146091915-146092041) | |
| 40-210, gnl|panTro1|chr6 (124506711-124507131) | |
| 40-210, gnl|rheMac2|chr3 (160444105-160444520) | |
| 40-210, gnl|rheMac2|chr6 (136532598-136532729) | |
| 40-210, gnl|rn3|chr18 (28950785-28950366) | |
| 40-210, gnl|rn3|chr18 (28950590-28950721) | |
| 40-210, gnl|xenTro1|scaffold_15 (364662-365135) | |
| 40-210, gnl|xenTro1|scaffold_15 (364867-364727) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.145603) |