Non-Coding RNA Search

rlin29_m12.y1

Sequence:


               
               CAGTAATTGGCGCTTAAATCACTAGATGAAAATATTGCCTCTGCTAGTAAAAGATCTGGA
CAGTCGCTGTAGTGTCTCCAAGTTTAGCTGAGGGAAGACCAAAAGAAGGAACTAGAAATT
AAAAGTACTTATTTTACATATTCAAGAAAGGAAAAGTCCTTTTTGGCCCACGTTCCAATG
CGTGAACCAGTAACCACCATTATTTACAGATAACTTCGCGTCAATTCACAGGATCTACAA
ACCAGCCAATCAACGACAGCCTCACTCCAGCGGCTTCTGAAAATCAGCCAGTCAACAACA
GCTTCACTCCGGTAGCTGGGCTTCTGAAAGTTCGTAAATCAATGACAGCCCCGAGCTTCT
GAAAGTCAGCCAATCATTGACAACTCCACGCTTCTAGGCAACAACCAATCAGCAAGTGCC
TCACTCCAGTGACTAGGCTTCTGAAAGTTAACCGGTCCTCAACTGCTTTACTCCGGTGAC
CACACTAGCAAAGCTGAAGTCCGTCAGCTTCTGGACGCTTGTGCTTCTGAAGTTATTGCC
AAATCACCGCTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTAATTGGCGCTTAAATCACTAGATGAAAATATTGCCTCTGCTAGTAAAAGATCTGGA
CAGTCGCTGTAGTGTCTCCAAGTTTAGCTGAGGGAAGACCAAAAGAAGGAACTAGAAATT
AAAAGTACTTATTTTACATATTCAAGAAAGGAAAAGTCCTTTTTGGCCCACGTTCCAATG
CGTGAACCAGTAACCACCATTATTTACAGATAACTTCGCGTCAATTCACAGGATCTACAA
ACCAGCCAATCAACGACAGCCTCACTCCAGCGGCTTCTGAAAATCAGCCAGTCAACAACA
GCTTCACTCCGGTAGCTGGGCTTCTGAAAGTTCGTAAATCAATGACAGCCCCGAGCTTCT
GAAAGTCAGCCAATCATTGACAACTCCACGCTTCTAGGCAACAACCAATCAGCAAGTGCC
TCACTCCAGTGACTAGGCTTCTGAAAGTTAACCGGTCCTCAACTGCTTTACTCCGGTGAC
CACACTAGCAAAGCTGAAGTCCGTCAGCTTCTGGACGCTTGTGCTTCTGAAGTTATTGCC
AAATCACCGCTGGCT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-542, gnl|bosTau2|chr13 (34812587-34813111)
               

               
               1-542, gnl|canFam2|chr24 (20904922-20904426)
               

               
               1-542, gnl|dasNov1|scaffold_62939 (2950-3457)
               

               
               1-542, gnl|echTel1|scaffold_285765 (2575-2096)
               

               
               1-542, gnl|hg17|chr20 (3337133-3337575)
               

               
               1-542, gnl|Hg17|chr20 (3337143-3337604)
               

               
               1-542, gnl|loxAfr1|scaffold_27375 (3672-3137)
               

               
               1-542, gnl|mm7|chr2 (130581640-130582019)
               

               
               1-542, gnl|oryCun1|scaffold_203337 (51861-51380)
               

               
               1-542, gnl|panTro1|chr21_random (9820861-9820419)
               

               
               1-542, gnl|rheMac2|chr10 (36729164-36729606)
               

               
               1-542, gnl|rn3|chr3 (118373737-118374127)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr13 (34812587-34813111)
               

               
               1-542, gnl|canFam2|chr24 (20904922-20904426)
               

               
               1-542, gnl|dasNov1|scaffold_62939 (2950-3457)
               

               
               1-542, gnl|echTel1|scaffold_285765 (2575-2096)
               

               
               1-542, gnl|hg17|chr20 (3337133-3337575)
               

               
               1-542, gnl|Hg17|chr20 (3337143-3337604)
               

               
               1-542, gnl|loxAfr1|scaffold_27375 (3672-3137)
               

               
               1-542, gnl|mm7|chr2 (130581640-130582019)
               

               
               1-542, gnl|oryCun1|scaffold_203337 (51861-51380)
               

               
               1-542, gnl|panTro1|chr21_random (9820861-9820419)
               

               
               1-542, gnl|rheMac2|chr10 (36729164-36729606)
               

               
               1-542, gnl|rn3|chr3 (118373737-118374127)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-542, gnl\|bosTau2\|chr13 (34812587-34813111)
	1-542, gnl\|canFam2\|chr24 (20904922-20904426)
	1-542, gnl\|dasNov1\|scaffold_62939 (2950-3457)
	1-542, gnl\|echTel1\|scaffold_285765 (2575-2096)
	1-542, gnl\|hg17\|chr20 (3337133-3337575)
	1-542, gnl\|Hg17\|chr20 (3337143-3337604)
	1-542, gnl\|loxAfr1\|scaffold_27375 (3672-3137)
	1-542, gnl\|mm7\|chr2 (130581640-130582019)
	1-542, gnl\|oryCun1\|scaffold_203337 (51861-51380)
	1-542, gnl\|panTro1\|chr21_random (9820861-9820419)
	1-542, gnl\|rheMac2\|chr10 (36729164-36729606)
	1-542, gnl\|rn3\|chr3 (118373737-118374127)