Non-Coding RNA Search

rlin36_a19.y1

Sequence:


               
               TTAAGGTGGGGCTTTTTTCATTCCTATCTGTGGATACTGATAGCAAAAAATTGGGGTAGA
AACAGAACTGTGTTTAACATTTTGTGTAGTCCAAGTTGAAGAGTGAACAAAGATGATGAG
GGGCAGATTTTCTGTTCGTTTTACATTTTTGTGAATAGAATGTCTTATTTTCCATACTTA
ACCCTTGCTGAGTAAAGCATGATATAATGTATCAGTTAAGATTATGTACCTTAGAGCAGA
GCTGACTTCATAAACCACCCATTAATTATGAAGTGTATAGCTGTGGATGTTAGTTTCTCT
CAACCTCATTTTCCTTGTCTTTAAAATCAGAGTAATAAGACTAACATATGGCATTAATGA
AAATTCAGTAATATTTAAACTTCATACTATTCCTGAAACAAAATAAGCACTCTTGATTAT
TAGCAGTTATCAATATATTATTGTCTCATTTTTATGTGAAACTTGGAAGAATTTACTTTT
CTTTCCTCCCATAACTTAAGATTCTGAACATGCTGCAGAATGATGTGAATGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGGTGGGGCTTTTTTCATTCCTATCTGTGGATACTGATAGCAAAAAATTGGGGTAGA
AACAGAACTGTGTTTAACATTTTGTGTAGTCCAAGTTGAAGAGTGAACAAAGATGATGAG
GGGCAGATTTTCTGTTCGTTTTACATTTTTGTGAATAGAATGTCTTATTTTCCATACTTA
ACCCTTGCTGAGTAAAGCATGATATAATGTATCAGTTAAGATTATGTACCTTAGAGCAGA
GCTGACTTCATAAACCACCCATTAATTATGAAGTGTATAGCTGTGGATGTTAGTTTCTCT
CAACCTCATTTTCCTTGTCTTTAAAATCAGAGTAATAAGACTAACATATGGCATTAATGA
AAATTCAGTAATATTTAAACTTCATACTATTCCTGAAACAAAATAAGCACTCTTGATTAT
TAGCAGTTATCAATATATTATTGTCTCATTTTTATGTGAAACTTGGAAGAATTTACTTTT
CTTTCCTCCCATAACTTAAGATTCTGAACATGCTGCAGAATGATGTGAATGTGGA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-165, gnl|bosTau2|chr22 (23516195-23516362)
               

               
               1-165, gnl|canFam2|chr20 (25675802-25675677)
               

               
               1-165, gnl|dasNov1|scaffold_309 (240880-241006)
               

               
               1-165, gnl|hg17|chr3 (69189639-69189766)
               

               
               1-165, gnl|Hg17|chr3 (69190101-69189647)
               

               
               1-165, gnl|mm7|chr6 (97275612-97275738)
               

               
               1-165, gnl|Mm7|chr6 (97275793-97275624)
               

               
               1-165, gnl|panTro1|chr2 (70975874-70976001)
               

               
               1-165, gnl|rheMac2|chr2 (67095443-67095323)
               

               
               1-165, gnl|rn3|chr4 (132150854-132150983)
               


               
               175-515, gnl|bosTau2|chr22 (23516411-23516751)
               

               
               175-515, gnl|Mm7|chr6 (97275578-97275287)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr22 (23516195-23516362)
               

               
               1-165, gnl|canFam2|chr20 (25675802-25675677)
               

               
               1-165, gnl|dasNov1|scaffold_309 (240880-241006)
               

               
               1-165, gnl|hg17|chr3 (69189639-69189766)
               

               
               1-165, gnl|Hg17|chr3 (69190101-69189647)
               

               
               1-165, gnl|mm7|chr6 (97275612-97275738)
               

               
               1-165, gnl|Mm7|chr6 (97275793-97275624)
               

               
               1-165, gnl|panTro1|chr2 (70975874-70976001)
               

               
               1-165, gnl|rheMac2|chr2 (67095443-67095323)
               

               
               1-165, gnl|rn3|chr4 (132150854-132150983)
               


               
               175-515, gnl|bosTau2|chr22 (23516411-23516751)
               

               
               175-515, gnl|Mm7|chr6 (97275578-97275287)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-165, gnl\|bosTau2\|chr22 (23516195-23516362)
	1-165, gnl\|canFam2\|chr20 (25675802-25675677)
	1-165, gnl\|dasNov1\|scaffold_309 (240880-241006)
	1-165, gnl\|hg17\|chr3 (69189639-69189766)
	1-165, gnl\|Hg17\|chr3 (69190101-69189647)
	1-165, gnl\|mm7\|chr6 (97275612-97275738)
	1-165, gnl\|Mm7\|chr6 (97275793-97275624)
	1-165, gnl\|panTro1\|chr2 (70975874-70976001)
	1-165, gnl\|rheMac2\|chr2 (67095443-67095323)
	1-165, gnl\|rn3\|chr4 (132150854-132150983)

	175-515, gnl\|bosTau2\|chr22 (23516411-23516751)
	175-515, gnl\|Mm7\|chr6 (97275578-97275287)