rlin36_o14.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAATTCTTCGAACAATGCGTGCCTCCAACAATGCCCTTGCAGATCTTGTTCCTGTAGA TGTAGTTGTCAACACGAGTCTTGCAGCAGCCTGGTATTCCGGAGTTAATAGACCAAGAAA CATCATGGTGTATAACTGTACAACAGGCAGCACTAATCCTTTCCACTGGGGTGAAGTTGA ATACCATGTAATTTCCACTTTCAAGAGGAATCCTCTCGAACAGGCCTTCAGACGGCCCAA TGTAAATCTAACCTCCAATCACCTTTTATATCATTACTGGATTGCTGTAAGCCATAAGGC CCCAGCATTCCTATATGATATCTACCTCAGGATGACTGGAAGAAGCCCAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAATTCTTCGAACAATGCGTGCCTCCAACAATGCCCTTGCAGATCTTGTTCCTGTAGA TGTAGTTGTCAACACGAGTCTTGCAGCAGCCTGGTATTCCGGAGTTAATAGACCAAGAAA CATCATGGTGTATAACTGTACAACAGGCAGCACTAATCCTTTCCACTGGGGTGAAGTTGA ATACCATGTAATTTCCACTTTCAAGAGGAATCCTCTCGAACAGGCCTTCAGACGGCCCAA TGTAAATCTAACCTCCAATCACCTTTTATATCATTACTGGATTGCTGTAAGCCATAAGGC CCCAGCATTCCTATATGATATCTACCTCAGGATGACTGGAAGAAGCCCAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 218-351, - strand, RNAz p=0.948374 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 218-351, - strand, RNAz p=0.948374 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-111, gnl|bosTau2|chr15 (25258129-25258239) | |
| 1-111, gnl|Hg17|chr11 (13690059-13690169) | |
| 1-111, gnl|Mm7|chr7 (109467270-109467380) | |
| 179-351, gnl|bosTau2|chr15 (25260793-25260965) | |
| 179-351, gnl|canFam2|chr21 (39759959-39760128) | |
| 179-351, gnl|canFam2|chr21 (39759919-39760133) | |
| 179-351, gnl|danRer3|chr9 (10370296-10370127) | |
| 179-351, gnl|danRer3|chr9 (10370320-10370122) | |
| 179-351, gnl|echTel1|scaffold_324552 (107810-107641) | |
| 179-351, gnl|echTel1|scaffold_324552 (107850-107636) | |
| 179-351, gnl|fr1|chrUn (112990454-112990284) | |
| 179-351, gnl|fr1|chrUn (112990482-112990280) | |
| 179-351, gnl|galGal2|chr5 (4991710-4991541) | |
| 179-351, gnl|galGal2|chr5 (4991750-4991536) | |
| 179-351, gnl|hg17|chr11 (13692593-13692807) | |
| 179-351, gnl|Hg17|chr11 (13692631-13692803) | |
| 179-351, gnl|hg17|chr13 (89621574-89621743) | |
| 179-351, gnl|loxAfr1|scaffold_7156 (24998-25167) | |
| 179-351, gnl|loxAfr1|scaffold_7156 (24958-25172) | |
| 179-351, gnl|mm7|chr7 (109469670-109469839) | |
| 179-351, gnl|mm7|chr7 (109469630-109469844) | |
| 179-351, gnl|Mm7|chr7 (109469668-109469840) | |
| 179-351, gnl|monDom2|scaffold_10 (64555601-64555770) | |
| 179-351, gnl|monDom2|scaffold_10 (64555561-64555775) | |
| 179-351, gnl|oryCun1|scaffold_172865 (33913-33699) | |
| 179-351, gnl|oryCun1|scaffold_49771 (590-759) | |
| 179-351, gnl|panTro1|chr14 (72575892-72576061) | |
| 179-351, gnl|panTro1|chr9 (13905978-13906192) | |
| 179-351, gnl|rheMac2|chr14 (58171625-58171411) | |
| 179-351, gnl|rheMac2|chr17 (70697680-70697849) | |
| 179-351, gnl|rn3|chr1 (171542361-171542530) | |
| 179-351, gnl|rn3|chr1 (171542321-171542535) | |
| 179-351, gnl|tetNig1|chr19 (1444239-1444410) | |
| 179-351, gnl|tetNig1|chr19 (1444229-1444407) | |
| 179-351, gnl|xenTro1|scaffold_552 (136497-136666) | |
| 179-351, gnl|xenTro1|scaffold_552 (136456-136671) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-111, gnl|bosTau2|chr15 (25258129-25258239) | |
| 1-111, gnl|Hg17|chr11 (13690059-13690169) | |
| 1-111, gnl|Mm7|chr7 (109467270-109467380) | |
| 179-351, gnl|bosTau2|chr15 (25260793-25260965) | |
| 179-351, gnl|canFam2|chr21 (39759959-39760128) | |
| 179-351, gnl|canFam2|chr21 (39759919-39760133) | |
| 179-351, gnl|danRer3|chr9 (10370296-10370127) | |
| 179-351, gnl|danRer3|chr9 (10370320-10370122) | |
| 179-351, gnl|echTel1|scaffold_324552 (107810-107641) | |
| 179-351, gnl|echTel1|scaffold_324552 (107850-107636) | |
| 179-351, gnl|fr1|chrUn (112990454-112990284) | |
| 179-351, gnl|fr1|chrUn (112990482-112990280) | |
| 179-351, gnl|galGal2|chr5 (4991710-4991541) | |
| 179-351, gnl|galGal2|chr5 (4991750-4991536) | |
| 179-351, gnl|hg17|chr11 (13692593-13692807) | |
| 179-351, gnl|Hg17|chr11 (13692631-13692803) | |
| 179-351, gnl|hg17|chr13 (89621574-89621743) | |
| 179-351, gnl|loxAfr1|scaffold_7156 (24998-25167) | |
| 179-351, gnl|loxAfr1|scaffold_7156 (24958-25172) | |
| 179-351, gnl|mm7|chr7 (109469670-109469839) | |
| 179-351, gnl|mm7|chr7 (109469630-109469844) | |
| 179-351, gnl|Mm7|chr7 (109469668-109469840) | |
| 179-351, gnl|monDom2|scaffold_10 (64555601-64555770) | |
| 179-351, gnl|monDom2|scaffold_10 (64555561-64555775) | |
| 179-351, gnl|oryCun1|scaffold_172865 (33913-33699) | |
| 179-351, gnl|oryCun1|scaffold_49771 (590-759) | |
| 179-351, gnl|panTro1|chr14 (72575892-72576061) | |
| 179-351, gnl|panTro1|chr9 (13905978-13906192) | |
| 179-351, gnl|rheMac2|chr14 (58171625-58171411) | |
| 179-351, gnl|rheMac2|chr17 (70697680-70697849) | |
| 179-351, gnl|rn3|chr1 (171542361-171542530) | |
| 179-351, gnl|rn3|chr1 (171542321-171542535) | |
| 179-351, gnl|tetNig1|chr19 (1444239-1444410) | |
| 179-351, gnl|tetNig1|chr19 (1444229-1444407) | |
| 179-351, gnl|xenTro1|scaffold_552 (136497-136666) | |
| 179-351, gnl|xenTro1|scaffold_552 (136456-136671) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.145603) |