Non-Coding RNA Search

rlnt01c_a14.y1

Sequence:


               
               CCTACCACACCAGATGAGGGCTGCCTCCGGTACTTTGTTCTGGGCACTGTGGCAGCTTTG
GTGGCCCTCGTGCTCAACGTGTTCTATCCTCTGGTATCCCAGAGTCCCTGGAGATGAGGT
CGCCTGCAGGCAGCTGTCAGGAGCTGGCCCACTACCTGCCCGCCAGGCCATACCTGTCTC
TGTGGTGGGGACCAACTCTGGGCTTGGGCCTCAGTGTGTGTATCTGAGGGGAGAGGGTGG
GGATTATGGCTCCTGCAGGGGCAGAGCATCCTAGGGTGGGTATCCTGTCTTCCTGTCCAT
TCGTTGTGCTGCTCCTTCCCTTGGTGTGGGGCTTAGCCCTGCCCAAGCAGCTTCCTGTAT
TTAAAGTGTTAATAAAGCGAGACTGTTCAGGTCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTACCACACCAGATGAGGGCTGCCTCCGGTACTTTGTTCTGGGCACTGTGGCAGCTTTG
GTGGCCCTCGTGCTCAACGTGTTCTATCCTCTGGTATCCCAGAGTCCCTGGAGATGAGGT
CGCCTGCAGGCAGCTGTCAGGAGCTGGCCCACTACCTGCCCGCCAGGCCATACCTGTCTC
TGTGGTGGGGACCAACTCTGGGCTTGGGCCTCAGTGTGTGTATCTGAGGGGAGAGGGTGG
GGATTATGGCTCCTGCAGGGGCAGAGCATCCTAGGGTGGGTATCCTGTCTTCCTGTCCAT
TCGTTGTGCTGCTCCTTCCCTTGGTGTGGGGCTTAGCCCTGCCCAAGCAGCTTCCTGTAT
TTAAAGTGTTAATAAAGCGAGACTGTTCAGGTCCAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60551769|gb|AAH91259.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60551769|gb|AAH91259.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-197, - strand, RNAz p=0.722523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-197, - strand, RNAz p=0.722523

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-394, gnl|bosTau2|chr22 (40078051-40077659)
               

               
               1-394, gnl|Hg17|chr3 (49121511-49121112)
               

               
               1-394, gnl|Mm7|chr9 (108213543-108213935)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-394, gnl|bosTau2|chr22 (40078051-40077659)
               

               
               1-394, gnl|Hg17|chr3 (49121511-49121112)
               

               
               1-394, gnl|Mm7|chr9 (108213543-108213935)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-394, gnl\|bosTau2\|chr22 (40078051-40077659)
	1-394, gnl\|Hg17\|chr3 (49121511-49121112)
	1-394, gnl\|Mm7\|chr9 (108213543-108213935)