Non-Coding RNA Search

rlnt02c_b18.y1

Sequence:


               
               CGTTGAACTCTCTCCCACCACTGGGCACTGCAACAGTGGACGAACTCGCCATGGATCCGC
AAGCCAAGTGCAGAAGCAAAGAAGTGCTGGCAGTTTCAAACGTACTAGCATTAAGAAGAT
CGTGTGAAGCTTTCTTTTCTTCCTTTTTCAAACAGACGTAACTGATACGGGCTCTTCACT
AGTGACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTGAACTCTCTCCCACCACTGGGCACTGCAACAGTGGACGAACTCGCCATGGATCCGC
AAGCCAAGTGCAGAAGCAAAGAAGTGCTGGCAGTTTCAAACGTACTAGCATTAAGAAGAT
CGTGTGAAGCTTTCTTTTCTTCCTTTTTCAAACAGACGTAACTGATACGGGCTCTTCACT
AGTGACCCC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               2-189, gnl|bosTau2|chr19 (9857102-9857289)
               

               
               2-189, gnl|canFam2|chr9 (44796661-44796484)
               

               
               2-189, gnl|danRer3|chr15 (35440433-35440281)
               

               
               2-189, gnl|echTel1|scaffold_313108 (2968-2790)
               

               
               2-189, gnl|fr1|chrUn (193760277-193760116)
               

               
               2-189, gnl|galGal2|chr19 (8542202-8542049)
               

               
               2-189, gnl|hg17|chr17 (26725123-26725300)
               

               
               2-189, gnl|Hg17|chr17 (26725174-26725357)
               

               
               2-189, gnl|loxAfr1|scaffold_6688 (45885-46062)
               

               
               2-189, gnl|mm7|chr11 (79659797-79659972)
               

               
               2-189, gnl|Mm7|chr11 (79659846-79660028)
               

               
               2-189, gnl|monDom2|scaffold_44 (12582459-12582295)
               

               
               2-189, gnl|oryCun1|scaffold_197971 (7849-7672)
               

               
               2-189, gnl|panTro1|chr19 (30163477-30163654)
               

               
               2-189, gnl|rheMac2|chr16 (26548806-26548983)
               

               
               2-189, gnl|rn3|chr10 (65779217-65779392)
               

               
               2-189, gnl|tetNig1|chr16 (8951388-8951238)
               

               
               2-189, gnl|xenTro1|scaffold_227 (1157374-1157193)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-189, gnl|bosTau2|chr19 (9857102-9857289)
               

               
               2-189, gnl|canFam2|chr9 (44796661-44796484)
               

               
               2-189, gnl|danRer3|chr15 (35440433-35440281)
               

               
               2-189, gnl|echTel1|scaffold_313108 (2968-2790)
               

               
               2-189, gnl|fr1|chrUn (193760277-193760116)
               

               
               2-189, gnl|galGal2|chr19 (8542202-8542049)
               

               
               2-189, gnl|hg17|chr17 (26725123-26725300)
               

               
               2-189, gnl|Hg17|chr17 (26725174-26725357)
               

               
               2-189, gnl|loxAfr1|scaffold_6688 (45885-46062)
               

               
               2-189, gnl|mm7|chr11 (79659797-79659972)
               

               
               2-189, gnl|Mm7|chr11 (79659846-79660028)
               

               
               2-189, gnl|monDom2|scaffold_44 (12582459-12582295)
               

               
               2-189, gnl|oryCun1|scaffold_197971 (7849-7672)
               

               
               2-189, gnl|panTro1|chr19 (30163477-30163654)
               

               
               2-189, gnl|rheMac2|chr16 (26548806-26548983)
               

               
               2-189, gnl|rn3|chr10 (65779217-65779392)
               

               
               2-189, gnl|tetNig1|chr16 (8951388-8951238)
               

               
               2-189, gnl|xenTro1|scaffold_227 (1157374-1157193)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	2-189, gnl\|bosTau2\|chr19 (9857102-9857289)
	2-189, gnl\|canFam2\|chr9 (44796661-44796484)
	2-189, gnl\|danRer3\|chr15 (35440433-35440281)
	2-189, gnl\|echTel1\|scaffold_313108 (2968-2790)
	2-189, gnl\|fr1\|chrUn (193760277-193760116)
	2-189, gnl\|galGal2\|chr19 (8542202-8542049)
	2-189, gnl\|hg17\|chr17 (26725123-26725300)
	2-189, gnl\|Hg17\|chr17 (26725174-26725357)
	2-189, gnl\|loxAfr1\|scaffold_6688 (45885-46062)
	2-189, gnl\|mm7\|chr11 (79659797-79659972)
	2-189, gnl\|Mm7\|chr11 (79659846-79660028)
	2-189, gnl\|monDom2\|scaffold_44 (12582459-12582295)
	2-189, gnl\|oryCun1\|scaffold_197971 (7849-7672)
	2-189, gnl\|panTro1\|chr19 (30163477-30163654)
	2-189, gnl\|rheMac2\|chr16 (26548806-26548983)
	2-189, gnl\|rn3\|chr10 (65779217-65779392)
	2-189, gnl\|tetNig1\|chr16 (8951388-8951238)
	2-189, gnl\|xenTro1\|scaffold_227 (1157374-1157193)