Non-Coding RNA Search

rlnt04c_o23.y1

Sequence:


               
               GAACCCAGGCGTAAGGAGCCGCAGGCCAGAGCCTGTGAGCAGGGCTTTCCTACCTTCTGA
AGAATGGCTCCTTGGCAGAGACTGAGGTTTTATGCCTTTCTTCTGCAAAGGCAGCTAAAT
GGTGGGCCAGATGTCATCAACTGGGGAAGAGGAGTGATTCCAGGATGTTCCAGAGGTATT
TACAGTGCTACAGGAAAGTGGACCAAAGAGTATACGTTGCAGACAAGAAAGGATGTGGAG
AAATGGTGGCATCAACGAATAAAAGAACAGGCCTCCAAAATTTCAGAAGCTGATAAATCG
AAGCCCAAGTTTTACGTGCTTTCCATGTTCCCGTATCCCTCCGGCAAGCTGCACATGGGC
CACGTGCGTGTGTACACCATCAGTGACACCATGGCACGCTTCCAGAAGATGAGAGGGATG
CAGGTAAGGGAAGACACCAGCTAGAACGGCACCTTCCTGCCCTACTATGTTCAGGACAAA
GGAAGGAAACCAGTCTTGGTGAAGATTAGGACAGCTTTGAAGACAAACATGAAAAGCACA
GGGTTTCCTCTGAAGAGCTGGAAGACATAATAAAGCATCTGGATTAACTGGGGGGCAGCT
GGGCCCTGGGTGTCAGACTGGGGATGGAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCCAGGCGTAAGGAGCCGCAGGCCAGAGCCTGTGAGCAGGGCTTTCCTACCTTCTGA
AGAATGGCTCCTTGGCAGAGACTGAGGTTTTATGCCTTTCTTCTGCAAAGGCAGCTAAAT
GGTGGGCCAGATGTCATCAACTGGGGAAGAGGAGTGATTCCAGGATGTTCCAGAGGTATT
TACAGTGCTACAGGAAAGTGGACCAAAGAGTATACGTTGCAGACAAGAAAGGATGTGGAG
AAATGGTGGCATCAACGAATAAAAGAACAGGCCTCCAAAATTTCAGAAGCTGATAAATCG
AAGCCCAAGTTTTACGTGCTTTCCATGTTCCCGTATCCCTCCGGCAAGCTGCACATGGGC
CACGTGCGTGTGTACACCATCAGTGACACCATGGCACGCTTCCAGAAGATGAGAGGGATG
CAGGTAAGGGAAGACACCAGCTAGAACGGCACCTTCCTGCCCTACTATGTTCAGGACAAA
GGAAGGAAACCAGTCTTGGTGAAGATTAGGACAGCTTTGAAGACAAACATGAAAAGCACA
GGGTTTCCTCTGAAGAGCTGGAAGACATAATAAAGCATCTGGATTAACTGGGGGGCAGCT
GGGCCCTGGGTGTCAGACTGGGGATGGAGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26330732|dbj|BAC29096.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26330732|dbj|BAC29096.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-155, - strand, RNAz p=0.535759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-155, - strand, RNAz p=0.535759

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               40-294, gnl|bosTau2|chr22 (44249054-44248797)
               

               
               40-294, gnl|Hg17|chr3 (45410926-45411183)
               

               
               40-294, gnl|Mm7|chr9 (123088084-123088335)
               


               
               295-630, gnl|bosTau2|chr22 (44242795-44242462)
               

               
               295-630, gnl|Hg17|chr3 (45416741-45417100)
               

               
               295-630, gnl|Mm7|chr9 (123093933-123094263)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-294, gnl|bosTau2|chr22 (44249054-44248797)
               

               
               40-294, gnl|Hg17|chr3 (45410926-45411183)
               

               
               40-294, gnl|Mm7|chr9 (123088084-123088335)
               


               
               295-630, gnl|bosTau2|chr22 (44242795-44242462)
               

               
               295-630, gnl|Hg17|chr3 (45416741-45417100)
               

               
               295-630, gnl|Mm7|chr9 (123093933-123094263)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	40-294, gnl\|bosTau2\|chr22 (44249054-44248797)
	40-294, gnl\|Hg17\|chr3 (45410926-45411183)
	40-294, gnl\|Mm7\|chr9 (123088084-123088335)

	295-630, gnl\|bosTau2\|chr22 (44242795-44242462)
	295-630, gnl\|Hg17\|chr3 (45416741-45417100)
	295-630, gnl\|Mm7\|chr9 (123093933-123094263)