Non-Coding RNA Search

rlnt08c_d11.y1

Sequence:


               
               GCGGTTTGAATTCCAGCGGCGCCGCCAGAGTCCTAACAAGAGCTAGGTTGGAGGGGGCGG
GGACCTGGGGAGCCGGCCTGGTAGCTACTGCGGGGGGAATCAGTGGCGCCGCCGCCAGAC
ACCAACGCCACCACCTCCTTTGTGTCCGTGATGGACTCGGTTTTGGAAGAGGACGTCACC
CTCCACGGGACGCTCAGCGGCGGCAGTGCCCTGGTTCCCAGTTTACCAGATGACCTGGAT
GGCACCAGCCCGGCTGTTGGTTTGGGAAATGGCGTGCTCCCGCCTGTGTCAGAAGAAAAG
GTGTCTCCCACCAGAGCACGGAACATGAAGGACTTTGAAAATGCTGCGTCTTTATTGCTG
TTGAATGAAATGTGAGCGCCTGTACCCAGCACTGCGCGGGAACTGTCTGAGCATGAATTG
CTGGTGATGGACTTGGCTTTGATGCCTACTGTCTCCTGTCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTTTGAATTCCAGCGGCGCCGCCAGAGTCCTAACAAGAGCTAGGTTGGAGGGGGCGG
GGACCTGGGGAGCCGGCCTGGTAGCTACTGCGGGGGGAATCAGTGGCGCCGCCGCCAGAC
ACCAACGCCACCACCTCCTTTGTGTCCGTGATGGACTCGGTTTTGGAAGAGGACGTCACC
CTCCACGGGACGCTCAGCGGCGGCAGTGCCCTGGTTCCCAGTTTACCAGATGACCTGGAT
GGCACCAGCCCGGCTGTTGGTTTGGGAAATGGCGTGCTCCCGCCTGTGTCAGAAGAAAAG
GTGTCTCCCACCAGAGCACGGAACATGAAGGACTTTGAAAATGCTGCGTCTTTATTGCTG
TTGAATGAAATGTGAGCGCCTGTACCCAGCACTGCGCGGGAACTGTCTGAGCATGAATTG
CTGGTGATGGACTTGGCTTTGATGCCTACTGTCTCCTGTCTTTC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-206, gnl|bosTau2|chr8 (61679246-61679452)
               

               
               1-206, gnl|dasNov1|scaffold_51338 (10126-9529)
               

               
               1-206, gnl|echTel1|scaffold_316186 (68735-68229)
               

               
               1-206, gnl|hg17|chr9 (120421632-120422270)
               

               
               1-206, gnl|Hg17|chr9 (120421959-120421752)
               

               
               1-206, gnl|loxAfr1|scaffold_636 (115520-114840)
               

               
               1-206, gnl|mm7|chr4 (69843825-69844404)
               

               
               1-206, gnl|Mm7|chr4 (69844111-69843910)
               

               
               1-206, gnl|monDom2|scaffold_38 (12672029-12672667)
               

               
               1-206, gnl|panTro1|chr11 (105156889-105157525)
               

               
               1-206, gnl|rheMac2|chr15 (15430344-15429705)
               

               
               1-206, gnl|rn3|chr5 (87743159-87743733)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-206, gnl|bosTau2|chr8 (61679246-61679452)
               

               
               1-206, gnl|dasNov1|scaffold_51338 (10126-9529)
               

               
               1-206, gnl|echTel1|scaffold_316186 (68735-68229)
               

               
               1-206, gnl|hg17|chr9 (120421632-120422270)
               

               
               1-206, gnl|Hg17|chr9 (120421959-120421752)
               

               
               1-206, gnl|loxAfr1|scaffold_636 (115520-114840)
               

               
               1-206, gnl|mm7|chr4 (69843825-69844404)
               

               
               1-206, gnl|Mm7|chr4 (69844111-69843910)
               

               
               1-206, gnl|monDom2|scaffold_38 (12672029-12672667)
               

               
               1-206, gnl|panTro1|chr11 (105156889-105157525)
               

               
               1-206, gnl|rheMac2|chr15 (15430344-15429705)
               

               
               1-206, gnl|rn3|chr5 (87743159-87743733)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-206, gnl\|bosTau2\|chr8 (61679246-61679452)
	1-206, gnl\|dasNov1\|scaffold_51338 (10126-9529)
	1-206, gnl\|echTel1\|scaffold_316186 (68735-68229)
	1-206, gnl\|hg17\|chr9 (120421632-120422270)
	1-206, gnl\|Hg17\|chr9 (120421959-120421752)
	1-206, gnl\|loxAfr1\|scaffold_636 (115520-114840)
	1-206, gnl\|mm7\|chr4 (69843825-69844404)
	1-206, gnl\|Mm7\|chr4 (69844111-69843910)
	1-206, gnl\|monDom2\|scaffold_38 (12672029-12672667)
	1-206, gnl\|panTro1\|chr11 (105156889-105157525)
	1-206, gnl\|rheMac2\|chr15 (15430344-15429705)
	1-206, gnl\|rn3\|chr5 (87743159-87743733)