Non-Coding RNA Search

rlnt09c_a20.y1

Sequence:


               
               TGTAAGGTACCCACAAAAAACATCAAAAACTATATTAATTAAAGAAAGATTTTGGGGTTT
CATGGATTTTGAAGAGAAGACTGGGACTAGCTTACATGGGACTATTAAAACTTACCTGCA
GCAAATTGGAATTGATTTGAATAAAATACGAGGCCAGGCATATGATAGTACCAGTAATTG
GAGGGAGAAATTTAATAAAATTGCAGCAGAATTCAAGAAGGAAGAGCCAAGAGCTTTGTA
CTTACATTGTTATGCACATTTTTGGGATTTAGCGGTGATTAGATTTTGTAAAGAAGTAAA
AGAGCTCCGAAGCGCTCTAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAAGGTACCCACAAAAAACATCAAAAACTATATTAATTAAAGAAAGATTTTGGGGTTT
CATGGATTTTGAAGAGAAGACTGGGACTAGCTTACATGGGACTATTAAAACTTACCTGCA
GCAAATTGGAATTGATTTGAATAAAATACGAGGCCAGGCATATGATAGTACCAGTAATTG
GAGGGAGAAATTTAATAAAATTGCAGCAGAATTCAAGAAGGAAGAGCCAAGAGCTTTGTA
CTTACATTGTTATGCACATTTTTGGGATTTAGCGGTGATTAGATTTTGTAAAGAAGTAAA
AGAGCTCCGAAGCGCTCTAAATA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-323, gnl|bosTau2|chr3 (77709374-77709052)
               

               
               1-323, gnl|dasNov1|scaffold_17041 (26015-25565)
               

               
               1-323, gnl|Hg17|chr1 (35248510-35248832)
               

               
               1-323, gnl|hg17|chr18 (58066061-58066549)
               

               
               1-323, gnl|loxAfr1|scaffold_26449 (31706-32155)
               

               
               1-323, gnl|mm7|chr1 (105608718-105609144)
               

               
               1-323, gnl|Mm7|chr4 (126493732-126493410)
               

               
               1-323, gnl|oryCun1|scaffold_157918 (7742-7260)
               

               
               1-323, gnl|panTro1|chr17 (54964059-54964546)
               

               
               1-323, gnl|rheMac2|chr18 (55617686-55618171)
               

               
               1-323, gnl|rn3|chr13 (11882491-11882927)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-323, gnl|bosTau2|chr3 (77709374-77709052)
               

               
               1-323, gnl|dasNov1|scaffold_17041 (26015-25565)
               

               
               1-323, gnl|Hg17|chr1 (35248510-35248832)
               

               
               1-323, gnl|hg17|chr18 (58066061-58066549)
               

               
               1-323, gnl|loxAfr1|scaffold_26449 (31706-32155)
               

               
               1-323, gnl|mm7|chr1 (105608718-105609144)
               

               
               1-323, gnl|Mm7|chr4 (126493732-126493410)
               

               
               1-323, gnl|oryCun1|scaffold_157918 (7742-7260)
               

               
               1-323, gnl|panTro1|chr17 (54964059-54964546)
               

               
               1-323, gnl|rheMac2|chr18 (55617686-55618171)
               

               
               1-323, gnl|rn3|chr13 (11882491-11882927)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-323, gnl\|bosTau2\|chr3 (77709374-77709052)
	1-323, gnl\|dasNov1\|scaffold_17041 (26015-25565)
	1-323, gnl\|Hg17\|chr1 (35248510-35248832)
	1-323, gnl\|hg17\|chr18 (58066061-58066549)
	1-323, gnl\|loxAfr1\|scaffold_26449 (31706-32155)
	1-323, gnl\|mm7\|chr1 (105608718-105609144)
	1-323, gnl\|Mm7\|chr4 (126493732-126493410)
	1-323, gnl\|oryCun1\|scaffold_157918 (7742-7260)
	1-323, gnl\|panTro1\|chr17 (54964059-54964546)
	1-323, gnl\|rheMac2\|chr18 (55617686-55618171)
	1-323, gnl\|rn3\|chr13 (11882491-11882927)