Non-Coding RNA Search

rlnt10c_e2.y1

Sequence:


               
               CTTATGGTTTCCTACAATTCATTGTCAAATTCATTCTTTGGGGATCAGCAAGGTTGAAGC
ACTTTTGAGCTTTGCGGAGTAGTTTCCTCTGCTCTGACTTGCTGCTCTATCCTGGGAGCC
GTTTCTTAGCCAAGCTGGAATTGGGCCCTGGCCGTAGCGAGTCTGGAAGGGACTTGGCAG
CTTTGCTGTCTACACAGAGAGCTGCCAGCTCAGCTGTTGTTTTTCACTGGGGCACGACAT
GCCCGATCAGAAGGCCTGATCTGGGGCAACTTGGCTCTCTCCCAGTGGCCACGGAAGCTG
TCTCTTCAGCTCCCCTGCGCCAGGGATTCTGTCCCGGCTGCCTGGCTGGCAGTGCTTGCA
GAAAGGCAGTGCCTTCTGCCCGGCCCAGGGGCTAAGGGTAGTGAGCCTTGCAACTAGGGC
ATCACTCCTCAGGGTGTCCCGGCTTCTGTGGATGTGGGACTCCCATTTGTGCAGCCACGG
GGTCTGATCTAGGCATCTACTGCACCCTTCAGTCAGGCAGGGTGGGCACTAATGTCCCCA
CTGCTTTTGGTCTGTTCAGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTATGGTTTCCTACAATTCATTGTCAAATTCATTCTTTGGGGATCAGCAAGGTTGAAGC
ACTTTTGAGCTTTGCGGAGTAGTTTCCTCTGCTCTGACTTGCTGCTCTATCCTGGGAGCC
GTTTCTTAGCCAAGCTGGAATTGGGCCCTGGCCGTAGCGAGTCTGGAAGGGACTTGGCAG
CTTTGCTGTCTACACAGAGAGCTGCCAGCTCAGCTGTTGTTTTTCACTGGGGCACGACAT
GCCCGATCAGAAGGCCTGATCTGGGGCAACTTGGCTCTCTCCCAGTGGCCACGGAAGCTG
TCTCTTCAGCTCCCCTGCGCCAGGGATTCTGTCCCGGCTGCCTGGCTGGCAGTGCTTGCA
GAAAGGCAGTGCCTTCTGCCCGGCCCAGGGGCTAAGGGTAGTGAGCCTTGCAACTAGGGC
ATCACTCCTCAGGGTGTCCCGGCTTCTGTGGATGTGGGACTCCCATTTGTGCAGCCACGG
GGTCTGATCTAGGCATCTACTGCACCCTTCAGTCAGGCAGGGTGGGCACTAATGTCCCCA
CTGCTTTTGGTCTGTTCAGAAGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               153-272, + strand, RNAz p=0.863717
               

               
               155-247, - strand, RNAz p=0.967634

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-272, + strand, RNAz p=0.863717
               

               
               155-247, - strand, RNAz p=0.967634

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               3-303, gnl|bosTau2|chr25 (9438782-9438482)
               

               
               3-303, gnl|canFam2|chr6 (34816901-34816455)
               

               
               3-303, gnl|dasNov1|scaffold_2504 (69165-68701)
               

               
               3-303, gnl|hg17|chr16 (10927084-10927553)
               

               
               3-303, gnl|Hg17|chr16 (10927143-10927447)
               

               
               3-303, gnl|mm7|chr16 (10204416-10204839)
               

               
               3-303, gnl|oryCun1|scaffold_145362 (7092-7531)
               

               
               3-303, gnl|panTro1|chr18 (11258515-11258984)
               

               
               3-303, gnl|rheMac2|chr20 (10996041-10996511)
               

               
               3-303, gnl|rn3|chr10 (5086873-5086452)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-303, gnl|bosTau2|chr25 (9438782-9438482)
               

               
               3-303, gnl|canFam2|chr6 (34816901-34816455)
               

               
               3-303, gnl|dasNov1|scaffold_2504 (69165-68701)
               

               
               3-303, gnl|hg17|chr16 (10927084-10927553)
               

               
               3-303, gnl|Hg17|chr16 (10927143-10927447)
               

               
               3-303, gnl|mm7|chr16 (10204416-10204839)
               

               
               3-303, gnl|oryCun1|scaffold_145362 (7092-7531)
               

               
               3-303, gnl|panTro1|chr18 (11258515-11258984)
               

               
               3-303, gnl|rheMac2|chr20 (10996041-10996511)
               

               
               3-303, gnl|rn3|chr10 (5086873-5086452)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	153-272, + strand, RNAz p=0.863717
	155-247, - strand, RNAz p=0.967634

	3-303, gnl\|bosTau2\|chr25 (9438782-9438482)
	3-303, gnl\|canFam2\|chr6 (34816901-34816455)
	3-303, gnl\|dasNov1\|scaffold_2504 (69165-68701)
	3-303, gnl\|hg17\|chr16 (10927084-10927553)
	3-303, gnl\|Hg17\|chr16 (10927143-10927447)
	3-303, gnl\|mm7\|chr16 (10204416-10204839)
	3-303, gnl\|oryCun1\|scaffold_145362 (7092-7531)
	3-303, gnl\|panTro1\|chr18 (11258515-11258984)
	3-303, gnl\|rheMac2\|chr20 (10996041-10996511)
	3-303, gnl\|rn3\|chr10 (5086873-5086452)