Non-Coding RNA Search

rlnt13c_l17.y1

Sequence:


               
               CACTGAGGCATCTCAGTAGAGGCTCTGGCAGTTTCCTCGCCAGAAGCGGACAAGGCCAGT
CAGGGTGGCATCATCATGCTGCAGCAGCTCCTGATCACCCTGCCCGCTGAAGCCAGCACC
TGGGTAAAGCTGTGCCACCCAGAGAAGGCCACGGAGGGGGCGCCCCTGTGGGAGGACGTG
ACTAAGATGTTGGAAGGAGAAGGTGAGGTGAGGCAGATGGAGGGAGGGGGGAGGAGGAGG
AGTTCGGTTTGCATGTGAAAAGACAGGTACCTGGTGGGGGTGGTCTCTTGGGTAGAAAAC
TGGAGGGAAGCAGGTCCTTGGGGCTCTTTCTGTGGCTTGGGGAAGGGGACAGCTATGAGA
GAAAGTGCTGGGggagttcccgttgtggcacagtggaaatgaatctaactaacatccccg
aggatgcgggtttgatcccaggcctcgctcagtgcatccaggatcaggcgttgctctgag
ctgtggtgtgggtc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGAGGCATCTCAGTAGAGGCTCTGGCAGTTTCCTCGCCAGAAGCGGACAAGGCCAGT
CAGGGTGGCATCATCATGCTGCAGCAGCTCCTGATCACCCTGCCCGCTGAAGCCAGCACC
TGGGTAAAGCTGTGCCACCCAGAGAAGGCCACGGAGGGGGCGCCCCTGTGGGAGGACGTG
ACTAAGATGTTGGAAGGAGAAGGTGAGGTGAGGCAGATGGAGGGAGGGGGGAGGAGGAGG
AGTTCGGTTTGCATGTGAAAAGACAGGTACCTGGTGGGGGTGGTCTCTTGGGTAGAAAAC
TGGAGGGAAGCAGGTCCTTGGGGCTCTTTCTGTGGCTTGGGGAAGGGGACAGCTATGAGA
GAAAGTGCTGGGggagttcccgttgtggcacagtggaaatgaatctaactaacatccccg
aggatgcgggtttgatcccaggcctcgctcagtgcatccaggatcaggcgttgctctgag
ctgtggtgtgggtc

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-121, - strand, RNAz p=0.974699

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-121, - strand, RNAz p=0.974699

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-372, gnl|bosTau2|chr3 (68031498-68031878)
               

               
               4-372, gnl|Hg17|chr1 (40614057-40614413)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-372, gnl|bosTau2|chr3 (68031498-68031878)
               

               
               4-372, gnl|Hg17|chr1 (40614057-40614413)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	4-372, gnl\|bosTau2\|chr3 (68031498-68031878)
	4-372, gnl\|Hg17\|chr1 (40614057-40614413)