Non-Coding RNA Search

rlnt13c_p16.y1

Sequence:


               
               ATTTGTGTTCTGCACAAACATGAAATTTTACAATGTTATGAAACAAATCTTCCTGTATTC
TGAATGCTTCTCTGCAAACTATTCTCTCCTCTACCTCCCACTATAGAGTTATATATACTA
CATCTTCAAATTCTTCCACCTCTGCATTCAGATGCAAAACCTTACTTGAAATGTATAATG
TATTTTACCCTTTCTAGTCCAAAGACTATTTTCAGGATTTTTAAATTTTCCTACCACTTT
CTGACCAAAGTGACACCCTCTTATTTCTTATACCTTCTACAAATGATAATTAGGCACAAC
AAGAGATCCAGATAAGGCGAGGAACTACCTCTTACTCTTCACAGAACTTGCCTTCCTTTT
TTAATAATAACTTTAAATGGAGTATATAATCTATAAAAAGTTTGGATCATTATATTGTAC
CCTAAAATTAATATAATATTGTAAATCAACTGTACTTTGATAAAGTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGTGTTCTGCACAAACATGAAATTTTACAATGTTATGAAACAAATCTTCCTGTATTC
TGAATGCTTCTCTGCAAACTATTCTCTCCTCTACCTCCCACTATAGAGTTATATATACTA
CATCTTCAAATTCTTCCACCTCTGCATTCAGATGCAAAACCTTACTTGAAATGTATAATG
TATTTTACCCTTTCTAGTCCAAAGACTATTTTCAGGATTTTTAAATTTTCCTACCACTTT
CTGACCAAAGTGACACCCTCTTATTTCTTATACCTTCTACAAATGATAATTAGGCACAAC
AAGAGATCCAGATAAGGCGAGGAACTACCTCTTACTCTTCACAGAACTTGCCTTCCTTTT
TTAATAATAACTTTAAATGGAGTATATAATCTATAAAAAGTTTGGATCATTATATTGTAC
CCTAAAATTAATATAATATTGTAAATCAACTGTACTTTGATAAAGTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-182, gnl|bosTau2|chr5 (59237738-59237932)
               

               
               1-182, gnl|canFam2|chr27 (39223525-39223122)
               

               
               1-182, gnl|dasNov1|scaffold_7629 (7827-7393)
               

               
               1-182, gnl|hg17|chr12 (9799319-9799786)
               

               
               1-182, gnl|Hg17|chr12 (9799640-9799445)
               

               
               1-182, gnl|loxAfr1|scaffold_7082 (53790-54224)
               

               
               1-182, gnl|mm7|chr6 (129293647-129294130)
               

               
               1-182, gnl|Mm7|chr6 (129293999-129293764)
               

               
               1-182, gnl|oryCun1|scaffold_214231 (10795-10360)
               

               
               1-182, gnl|panTro1|chrUn_random (36053028-36053491)
               

               
               1-182, gnl|rheMac2|chr11 (9972357-9972819)
               

               
               1-182, gnl|rn3|chr4 (166775635-166776121)
               


               
               196-467, gnl|bosTau2|chr5 (59238017-59238280)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr5 (59237738-59237932)
               

               
               1-182, gnl|canFam2|chr27 (39223525-39223122)
               

               
               1-182, gnl|dasNov1|scaffold_7629 (7827-7393)
               

               
               1-182, gnl|hg17|chr12 (9799319-9799786)
               

               
               1-182, gnl|Hg17|chr12 (9799640-9799445)
               

               
               1-182, gnl|loxAfr1|scaffold_7082 (53790-54224)
               

               
               1-182, gnl|mm7|chr6 (129293647-129294130)
               

               
               1-182, gnl|Mm7|chr6 (129293999-129293764)
               

               
               1-182, gnl|oryCun1|scaffold_214231 (10795-10360)
               

               
               1-182, gnl|panTro1|chrUn_random (36053028-36053491)
               

               
               1-182, gnl|rheMac2|chr11 (9972357-9972819)
               

               
               1-182, gnl|rn3|chr4 (166775635-166776121)
               


               
               196-467, gnl|bosTau2|chr5 (59238017-59238280)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-182, gnl\|bosTau2\|chr5 (59237738-59237932)
	1-182, gnl\|canFam2\|chr27 (39223525-39223122)
	1-182, gnl\|dasNov1\|scaffold_7629 (7827-7393)
	1-182, gnl\|hg17\|chr12 (9799319-9799786)
	1-182, gnl\|Hg17\|chr12 (9799640-9799445)
	1-182, gnl\|loxAfr1\|scaffold_7082 (53790-54224)
	1-182, gnl\|mm7\|chr6 (129293647-129294130)
	1-182, gnl\|Mm7\|chr6 (129293999-129293764)
	1-182, gnl\|oryCun1\|scaffold_214231 (10795-10360)
	1-182, gnl\|panTro1\|chrUn_random (36053028-36053491)
	1-182, gnl\|rheMac2\|chr11 (9972357-9972819)
	1-182, gnl\|rn3\|chr4 (166775635-166776121)

	196-467, gnl\|bosTau2\|chr5 (59238017-59238280)