Non-Coding RNA Search

rlnt15c_a3.y1

Sequence:


               
               CTTCACTTCATTAGCACAGAATAATCAAAACAAGACATTACCAGGTGATTACCCAAGGCC
ATTCTCCGTCCACTTGTTTCCTTGCCAGCTTCCCAGGACAGAGGTTGAAAATGGCAGATA
TTCTCATTCCCAGCCTCCTCTGCAGTTAACAATAGCCATGTGGTCCAGGTCAGGCCAGTG
GGAACCAAGAGAGAGATGGCTGAGGGGCTTGGAGGAAAGATTTTCTTACCTCAGTGAAAG
ACAAGACGCCTGGGTAGAGAGCCTTTATATTTCCATCCTTCCTGCTTCCTTCCTGTTGGG
GTTACATTTGAGAAGGTAATTCCAGGTGCTGTAGCAGCCATCTGTGACCATCACTAAAAC
ACTGAGGATGACAAAGCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCACTTCATTAGCACAGAATAATCAAAACAAGACATTACCAGGTGATTACCCAAGGCC
ATTCTCCGTCCACTTGTTTCCTTGCCAGCTTCCCAGGACAGAGGTTGAAAATGGCAGATA
TTCTCATTCCCAGCCTCCTCTGCAGTTAACAATAGCCATGTGGTCCAGGTCAGGCCAGTG
GGAACCAAGAGAGAGATGGCTGAGGGGCTTGGAGGAAAGATTTTCTTACCTCAGTGAAAG
ACAAGACGCCTGGGTAGAGAGCCTTTATATTTCCATCCTTCCTGCTTCCTTCCTGTTGGG
GTTACATTTGAGAAGGTAATTCCAGGTGCTGTAGCAGCCATCTGTGACCATCACTAAAAC
ACTGAGGATGACAAAGCAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.95868
               

               
               125-238, - strand, RNAz p=0.522328

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.95868
               

               
               125-238, - strand, RNAz p=0.522328

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-351, gnl|bosTau2|chr15 (38093745-38094094)
               

               
               2-351, gnl|canFam2|chr18 (38206950-38206533)
               

               
               2-351, gnl|dasNov1|scaffold_1112 (137773-137363)
               

               
               2-351, gnl|echTel1|scaffold_304026 (3968-4405)
               

               
               2-351, gnl|hg17|chr11 (32320593-32321020)
               

               
               2-351, gnl|Hg17|chr11 (32320708-32321050)
               

               
               2-351, gnl|loxAfr1|scaffold_24642 (36914-36486)
               

               
               2-351, gnl|mm7|chr2 (105069910-105069542)
               

               
               2-351, gnl|oryCun1|scaffold_213562 (14367-14786)
               

               
               2-351, gnl|panTro1|chr9 (32679794-32680219)
               

               
               2-351, gnl|rheMac2|chr14 (39450439-39450013)
               

               
               2-351, gnl|rn3|chr3 (90520083-90519713)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-351, gnl|bosTau2|chr15 (38093745-38094094)
               

               
               2-351, gnl|canFam2|chr18 (38206950-38206533)
               

               
               2-351, gnl|dasNov1|scaffold_1112 (137773-137363)
               

               
               2-351, gnl|echTel1|scaffold_304026 (3968-4405)
               

               
               2-351, gnl|hg17|chr11 (32320593-32321020)
               

               
               2-351, gnl|Hg17|chr11 (32320708-32321050)
               

               
               2-351, gnl|loxAfr1|scaffold_24642 (36914-36486)
               

               
               2-351, gnl|mm7|chr2 (105069910-105069542)
               

               
               2-351, gnl|oryCun1|scaffold_213562 (14367-14786)
               

               
               2-351, gnl|panTro1|chr9 (32679794-32680219)
               

               
               2-351, gnl|rheMac2|chr14 (39450439-39450013)
               

               
               2-351, gnl|rn3|chr3 (90520083-90519713)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	120-239, - strand, RNAz p=0.95868
	125-238, - strand, RNAz p=0.522328

	2-351, gnl\|bosTau2\|chr15 (38093745-38094094)
	2-351, gnl\|canFam2\|chr18 (38206950-38206533)
	2-351, gnl\|dasNov1\|scaffold_1112 (137773-137363)
	2-351, gnl\|echTel1\|scaffold_304026 (3968-4405)
	2-351, gnl\|hg17\|chr11 (32320593-32321020)
	2-351, gnl\|Hg17\|chr11 (32320708-32321050)
	2-351, gnl\|loxAfr1\|scaffold_24642 (36914-36486)
	2-351, gnl\|mm7\|chr2 (105069910-105069542)
	2-351, gnl\|oryCun1\|scaffold_213562 (14367-14786)
	2-351, gnl\|panTro1\|chr9 (32679794-32680219)
	2-351, gnl\|rheMac2\|chr14 (39450439-39450013)
	2-351, gnl\|rn3\|chr3 (90520083-90519713)