Non-Coding RNA Search

rlnt16c_m2.y1

Sequence:


               
               TCTCCAGGAAGTTCAAATGTCTCTTCTCCCTTACCTTGTTTTGGATCCTCATTCCACTCT
ACAACTTCCTTTGTCATTAGTGACATCACCGAGGAGACCGAGGTAGAGGTCCCTGAGCTT
CCATCAGTCCCCCTGCTTTGTTCTGGCAGCCCTGAATGTTGCAAACCAGAATACAAAGCT
ACCTGCAGTTCGTCTGAAGAGGATGACTGCGTCTCTCTGTCCAAGGCCAGCAGCTTTGCA
GATATGATGGGTATCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCAGGAAGTTCAAATGTCTCTTCTCCCTTACCTTGTTTTGGATCCTCATTCCACTCT
ACAACTTCCTTTGTCATTAGTGACATCACCGAGGAGACCGAGGTAGAGGTCCCTGAGCTT
CCATCAGTCCCCCTGCTTTGTTCTGGCAGCCCTGAATGTTGCAAACCAGAATACAAAGCT
ACCTGCAGTTCGTCTGAAGAGGATGACTGCGTCTCTCTGTCCAAGGCCAGCAGCTTTGCA
GATATGATGGGTATCCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.817143

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.817143

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-259, gnl|bosTau2|chr2 (79979724-79979466)
               

               
               1-259, gnl|canFam2|chr31 (10425816-10425678)
               

               
               1-259, gnl|dasNov1|scaffold_73186 (1209-1052)
               

               
               1-259, gnl|echTel1|scaffold_164985 (1302-1157)
               

               
               1-259, gnl|Hg17|chr1 (25840175-25840433)
               

               
               1-259, gnl|hg17|chr3 (79966888-79967031)
               

               
               1-259, gnl|loxAfr1|scaffold_14145 (4604-4390)
               

               
               1-259, gnl|mm7|chr4 (133907812-133907604)
               

               
               1-259, gnl|Mm7|chr4 (133907818-133907560)
               

               
               1-259, gnl|oryCun1|scaffold_142444 (10474-10686)
               

               
               1-259, gnl|panTro1|chr2 (82194654-82194796)
               

               
               1-259, gnl|rheMac2|chr1 (28435516-28435728)
               

               
               1-259, gnl|rn3|chr5 (153295980-153295769)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-259, gnl|bosTau2|chr2 (79979724-79979466)
               

               
               1-259, gnl|canFam2|chr31 (10425816-10425678)
               

               
               1-259, gnl|dasNov1|scaffold_73186 (1209-1052)
               

               
               1-259, gnl|echTel1|scaffold_164985 (1302-1157)
               

               
               1-259, gnl|Hg17|chr1 (25840175-25840433)
               

               
               1-259, gnl|hg17|chr3 (79966888-79967031)
               

               
               1-259, gnl|loxAfr1|scaffold_14145 (4604-4390)
               

               
               1-259, gnl|mm7|chr4 (133907812-133907604)
               

               
               1-259, gnl|Mm7|chr4 (133907818-133907560)
               

               
               1-259, gnl|oryCun1|scaffold_142444 (10474-10686)
               

               
               1-259, gnl|panTro1|chr2 (82194654-82194796)
               

               
               1-259, gnl|rheMac2|chr1 (28435516-28435728)
               

               
               1-259, gnl|rn3|chr5 (153295980-153295769)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-259, gnl\|bosTau2\|chr2 (79979724-79979466)
	1-259, gnl\|canFam2\|chr31 (10425816-10425678)
	1-259, gnl\|dasNov1\|scaffold_73186 (1209-1052)
	1-259, gnl\|echTel1\|scaffold_164985 (1302-1157)
	1-259, gnl\|Hg17\|chr1 (25840175-25840433)
	1-259, gnl\|hg17\|chr3 (79966888-79967031)
	1-259, gnl\|loxAfr1\|scaffold_14145 (4604-4390)
	1-259, gnl\|mm7\|chr4 (133907812-133907604)
	1-259, gnl\|Mm7\|chr4 (133907818-133907560)
	1-259, gnl\|oryCun1\|scaffold_142444 (10474-10686)
	1-259, gnl\|panTro1\|chr2 (82194654-82194796)
	1-259, gnl\|rheMac2\|chr1 (28435516-28435728)
	1-259, gnl\|rn3\|chr5 (153295980-153295769)