Non-Coding RNA Search

rlnt20c_m6.y1

Sequence:


               
               GGAAAATGTATGTTTCCAAGGCGGACGGAGCACCTGGAAACTCCAGCTGGCCCCACGCCC
CTGGGCCAGGCCACAGCCAAGAGGCCTGGGGCCCTGGGGTGACACCTGGCCATCGCTTCC
TCGTGGCTCCTGTCGCTGCTCTGGGTGAACAGTGCGTGTTTGGGGGGCTTGAGTCAGGAC
AGAATCTGGACGCGTGGAGACTGGCAGGTGGGCGCCCCCGGGTGAGCTCCCTCTGCCATG
ACCCAGGTGAACCTTCCAGACCAGAACTTTCTCCACGTTCTGGGAGCCTGTGGACCCCCA
GCCCAGGCTCGGAGCCTGGGCTGCTGTCCTGGGAAGGCCAGCCCCTCTGCAAGAATTGTC
CAGCTGCCCGGGGCATGAGTCACAGCCCGCCGCTCCCGGCAGCGCCCTGCGGATTCAGAA
GCCCCAGCCCGTTTCCTGCAGATAAGTGATAAGAGCAGGGGAGCCTGGCAGGGGAGGAGC
CCCCACGGGGACCCGCGCTTCCTTCAAAGCCCCCCAAGCGCTAATTAGCAATTCCAAGCA
TAGTTTCAGCAGCATTTAGGGATTTCCTCATCAAAATAAACTTCCTCCCGTGTTATCTTC
AAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAATGTATGTTTCCAAGGCGGACGGAGCACCTGGAAACTCCAGCTGGCCCCACGCCC
CTGGGCCAGGCCACAGCCAAGAGGCCTGGGGCCCTGGGGTGACACCTGGCCATCGCTTCC
TCGTGGCTCCTGTCGCTGCTCTGGGTGAACAGTGCGTGTTTGGGGGGCTTGAGTCAGGAC
AGAATCTGGACGCGTGGAGACTGGCAGGTGGGCGCCCCCGGGTGAGCTCCCTCTGCCATG
ACCCAGGTGAACCTTCCAGACCAGAACTTTCTCCACGTTCTGGGAGCCTGTGGACCCCCA
GCCCAGGCTCGGAGCCTGGGCTGCTGTCCTGGGAAGGCCAGCCCCTCTGCAAGAATTGTC
CAGCTGCCCGGGGCATGAGTCACAGCCCGCCGCTCCCGGCAGCGCCCTGCGGATTCAGAA
GCCCCAGCCCGTTTCCTGCAGATAAGTGATAAGAGCAGGGGAGCCTGGCAGGGGAGGAGC
CCCCACGGGGACCCGCGCTTCCTTCAAAGCCCCCCAAGCGCTAATTAGCAATTCCAAGCA
TAGTTTCAGCAGCATTTAGGGATTTCCTCATCAAAATAAACTTCCTCCCGTGTTATCTTC
AAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-350, + strand, RNAz p=0.663674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-350, + strand, RNAz p=0.663674

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr29 (40659198-40659788)
               

               
               1-600, gnl|Hg17|chr11 (68973434-68974034)
               

               
               1-600, gnl|Mm7|chr7 (141451227-141450718)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr29 (40659198-40659788)
               

               
               1-600, gnl|Hg17|chr11 (68973434-68974034)
               

               
               1-600, gnl|Mm7|chr7 (141451227-141450718)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-600, gnl\|bosTau2\|chr29 (40659198-40659788)
	1-600, gnl\|Hg17\|chr11 (68973434-68974034)
	1-600, gnl\|Mm7\|chr7 (141451227-141450718)