Non-Coding RNA Search

rlnt21c_d20.y1

Sequence:


               
               TAAATCTCTGGTCCAACTAGACATTAGCAGAATCCCACTGCTCTCTCTGAGCCAAAAGAT
TCCCCTCAGGGATGTTCCCTCTGAAAAGGTTGGGTCATTGAGTTAATTTTCCACTAAAAA
CAGGTCACGTTAACCTTGGGGAATTCCAGCTACAGGAATGGAAAATGTGCTACCTGAAAG
AATTCTGGCATCTGCTGAGCAGAATCCTGCTACTGAAAGGGTGATGACCCAGATACTGTG
AACTCTGAAAGGATGAGCATGATCACAGTAAATAGGAAAAGAACTCCCAAAAAAAAAAAA
AAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATCTCTGGTCCAACTAGACATTAGCAGAATCCCACTGCTCTCTCTGAGCCAAAAGAT
TCCCCTCAGGGATGTTCCCTCTGAAAAGGTTGGGTCATTGAGTTAATTTTCCACTAAAAA
CAGGTCACGTTAACCTTGGGGAATTCCAGCTACAGGAATGGAAAATGTGCTACCTGAAAG
AATTCTGGCATCTGCTGAGCAGAATCCTGCTACTGAAAGGGTGATGACCCAGATACTGTG
AACTCTGAAAGGATGAGCATGATCACAGTAAATAGGAAAAGAACTCCCAAAAAAAAAAAA
AAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               62-152, - strand, RNAz p=0.60488

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-152, - strand, RNAz p=0.60488

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-285, gnl|bosTau2|chr5 (32690683-32690404)
               

               
               6-285, gnl|canFam2|chr10 (4128975-4129233)
               

               
               6-285, gnl|dasNov1|scaffold_11868 (53273-52907)
               

               
               6-285, gnl|echTel1|scaffold_202463 (9955-10278)
               

               
               6-285, gnl|hg17|chr12 (55678429-55678783)
               

               
               6-285, gnl|Hg17|chr12 (55678587-55678882)
               

               
               6-285, gnl|loxAfr1|scaffold_30869 (15614-15972)
               

               
               6-285, gnl|mm7|chr10 (127249227-127248889)
               

               
               6-285, gnl|Mm7|chr10 (127249064-127248753)
               

               
               6-285, gnl|monDom2|scaffold_303 (47266-47609)
               

               
               6-285, gnl|oryCun1|scaffold_98975 (6209-5899)
               

               
               6-285, gnl|panTro1|chr10 (56920128-56920480)
               

               
               6-285, gnl|rheMac2|chr11 (54061517-54061871)
               

               
               6-285, gnl|rn3|chr7 (67760174-67759883)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-285, gnl|bosTau2|chr5 (32690683-32690404)
               

               
               6-285, gnl|canFam2|chr10 (4128975-4129233)
               

               
               6-285, gnl|dasNov1|scaffold_11868 (53273-52907)
               

               
               6-285, gnl|echTel1|scaffold_202463 (9955-10278)
               

               
               6-285, gnl|hg17|chr12 (55678429-55678783)
               

               
               6-285, gnl|Hg17|chr12 (55678587-55678882)
               

               
               6-285, gnl|loxAfr1|scaffold_30869 (15614-15972)
               

               
               6-285, gnl|mm7|chr10 (127249227-127248889)
               

               
               6-285, gnl|Mm7|chr10 (127249064-127248753)
               

               
               6-285, gnl|monDom2|scaffold_303 (47266-47609)
               

               
               6-285, gnl|oryCun1|scaffold_98975 (6209-5899)
               

               
               6-285, gnl|panTro1|chr10 (56920128-56920480)
               

               
               6-285, gnl|rheMac2|chr11 (54061517-54061871)
               

               
               6-285, gnl|rn3|chr7 (67760174-67759883)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	6-285, gnl\|bosTau2\|chr5 (32690683-32690404)
	6-285, gnl\|canFam2\|chr10 (4128975-4129233)
	6-285, gnl\|dasNov1\|scaffold_11868 (53273-52907)
	6-285, gnl\|echTel1\|scaffold_202463 (9955-10278)
	6-285, gnl\|hg17\|chr12 (55678429-55678783)
	6-285, gnl\|Hg17\|chr12 (55678587-55678882)
	6-285, gnl\|loxAfr1\|scaffold_30869 (15614-15972)
	6-285, gnl\|mm7\|chr10 (127249227-127248889)
	6-285, gnl\|Mm7\|chr10 (127249064-127248753)
	6-285, gnl\|monDom2\|scaffold_303 (47266-47609)
	6-285, gnl\|oryCun1\|scaffold_98975 (6209-5899)
	6-285, gnl\|panTro1\|chr10 (56920128-56920480)
	6-285, gnl\|rheMac2\|chr11 (54061517-54061871)
	6-285, gnl\|rn3\|chr7 (67760174-67759883)