Non-Coding RNA Search

rlnt22c_d12.y1

Sequence:


               
               TCTAAGTATAACTTCTAACTTTTACTCAACAAGGCACAGTGCCAGTGAAAGCTTTCAGTA
GAATTCCATATGTGGTGGAATATACAGTTTTACCAACTGTAGGGAAAATATCACTCACAG
TTTAGGTGCCTGAGCCTTGGATGGCCAGTTTCCCATGATTTAAATCAGACATTTAAATTG
GTGATGGATATCTTCTTGGTTGGGAACAGCAGAGAGGATAAAATTATATCTCCTCCCCAA
ACCCCTCCAAATTTAGAAGCAGGAATGGGGGCTTAGGATTGGGGATTTATCCCAAGCATT
CGCTGTCCTATTTACTAAAAAAGAAGAGAGTGAAAGAGTAGTCACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAAGTATAACTTCTAACTTTTACTCAACAAGGCACAGTGCCAGTGAAAGCTTTCAGTA
GAATTCCATATGTGGTGGAATATACAGTTTTACCAACTGTAGGGAAAATATCACTCACAG
TTTAGGTGCCTGAGCCTTGGATGGCCAGTTTCCCATGATTTAAATCAGACATTTAAATTG
GTGATGGATATCTTCTTGGTTGGGAACAGCAGAGAGGATAAAATTATATCTCCTCCCCAA
ACCCCTCCAAATTTAGAAGCAGGAATGGGGGCTTAGGATTGGGGATTTATCCCAAGCATT
CGCTGTCCTATTTACTAAAAAAGAAGAGAGTGAAAGAGTAGTCACTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               6-123, - strand, RNAz p=0.859132
               

               
               112-220, - strand, RNAz p=0.99686

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-123, - strand, RNAz p=0.859132
               

               
               112-220, - strand, RNAz p=0.99686

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-220, gnl|bosTau2|chr28 (23134471-23134685)
               

               
               6-220, gnl|canFam2|chr4 (27628818-27629008)
               

               
               6-220, gnl|dasNov1|scaffold_42705 (10876-11064)
               

               
               6-220, gnl|echTel1|scaffold_282769 (7602-7792)
               

               
               6-220, gnl|hg17|chr10 (75443679-75443866)
               

               
               6-220, gnl|Hg17|chr10 (75443685-75443908)
               

               
               6-220, gnl|loxAfr1|scaffold_47969 (10683-10868)
               

               
               6-220, gnl|mm7|chr14 (18598497-18598663)
               

               
               6-220, gnl|Mm7|chr14 (18598503-18599304)
               

               
               6-220, gnl|monDom2|scaffold_14 (2038189-2038417)
               

               
               6-220, gnl|oryCun1|scaffold_150520 (5692-5503)
               

               
               6-220, gnl|panTro1|chr8 (76683963-76684154)
               

               
               6-220, gnl|rheMac2|chr9 (63001197-63001007)
               

               
               6-220, gnl|rn3|chr15 (3557466-3557301)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-220, gnl|bosTau2|chr28 (23134471-23134685)
               

               
               6-220, gnl|canFam2|chr4 (27628818-27629008)
               

               
               6-220, gnl|dasNov1|scaffold_42705 (10876-11064)
               

               
               6-220, gnl|echTel1|scaffold_282769 (7602-7792)
               

               
               6-220, gnl|hg17|chr10 (75443679-75443866)
               

               
               6-220, gnl|Hg17|chr10 (75443685-75443908)
               

               
               6-220, gnl|loxAfr1|scaffold_47969 (10683-10868)
               

               
               6-220, gnl|mm7|chr14 (18598497-18598663)
               

               
               6-220, gnl|Mm7|chr14 (18598503-18599304)
               

               
               6-220, gnl|monDom2|scaffold_14 (2038189-2038417)
               

               
               6-220, gnl|oryCun1|scaffold_150520 (5692-5503)
               

               
               6-220, gnl|panTro1|chr8 (76683963-76684154)
               

               
               6-220, gnl|rheMac2|chr9 (63001197-63001007)
               

               
               6-220, gnl|rn3|chr15 (3557466-3557301)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	6-123, - strand, RNAz p=0.859132
	112-220, - strand, RNAz p=0.99686

	6-220, gnl\|bosTau2\|chr28 (23134471-23134685)
	6-220, gnl\|canFam2\|chr4 (27628818-27629008)
	6-220, gnl\|dasNov1\|scaffold_42705 (10876-11064)
	6-220, gnl\|echTel1\|scaffold_282769 (7602-7792)
	6-220, gnl\|hg17\|chr10 (75443679-75443866)
	6-220, gnl\|Hg17\|chr10 (75443685-75443908)
	6-220, gnl\|loxAfr1\|scaffold_47969 (10683-10868)
	6-220, gnl\|mm7\|chr14 (18598497-18598663)
	6-220, gnl\|Mm7\|chr14 (18598503-18599304)
	6-220, gnl\|monDom2\|scaffold_14 (2038189-2038417)
	6-220, gnl\|oryCun1\|scaffold_150520 (5692-5503)
	6-220, gnl\|panTro1\|chr8 (76683963-76684154)
	6-220, gnl\|rheMac2\|chr9 (63001197-63001007)
	6-220, gnl\|rn3\|chr15 (3557466-3557301)