Non-Coding RNA Search

rlnt26c_k23.y1

Sequence:


               
               TAAAGTCGTAAGTGGCCTCGAAGCAGAACCTGCATCGGTGACATCTCAGTTAGAAATTGA
AGACACGCCCCCAAAGGACAGTGATGTCAGTCCAGGCGAGGAGGTGATTAAAAGTGAAGA
TCAGTCCACCCAGCAGAGTCAGAGTGCTTTGCTGAGTAATGAAAGTTCTCAGTTTCTGTC
TGTGTCTGCAGAGGGAGACTGTGAGTGTGTGCCAAATGGAATCTCCAGAAATAGCTCCTC
ACCTTGTATTTCAGGAACCACACAGACTGGCCATGACTCTTCTGTGGGTTCTGCAGAAAC
CAGGTCAAGACAGAGAAGTCACAGTAGTATTCAGTTCAGCTTCAAAGAAAAATTATCAGA
AAAGGTCTCAGAGAAAGAAACAATTGTTAAGGAGTCAGGGAAACAACCAGGAGCAAAACC
TAAAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGTCGTAAGTGGCCTCGAAGCAGAACCTGCATCGGTGACATCTCAGTTAGAAATTGA
AGACACGCCCCCAAAGGACAGTGATGTCAGTCCAGGCGAGGAGGTGATTAAAAGTGAAGA
TCAGTCCACCCAGCAGAGTCAGAGTGCTTTGCTGAGTAATGAAAGTTCTCAGTTTCTGTC
TGTGTCTGCAGAGGGAGACTGTGAGTGTGTGCCAAATGGAATCTCCAGAAATAGCTCCTC
ACCTTGTATTTCAGGAACCACACAGACTGGCCATGACTCTTCTGTGGGTTCTGCAGAAAC
CAGGTCAAGACAGAGAAGTCACAGTAGTATTCAGTTCAGCTTCAAAGAAAAATTATCAGA
AAAGGTCTCAGAGAAAGAAACAATTGTTAAGGAGTCAGGGAAACAACCAGGAGCAAAACC
TAAAGTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.910722

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.910722

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648667, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648667, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-429, gnl|bosTau2|chr9 (10041944-10042372)
               

               
               1-429, gnl|canFam2|chr12 (46557085-46557461)
               

               
               1-429, gnl|danRer3|chr16 (44200932-44200559)
               

               
               1-429, gnl|dasNov1|scaffold_55244 (36749-37125)
               

               
               1-429, gnl|echTel1|scaffold_293250 (1917-2290)
               

               
               1-429, gnl|fr1|chrUn (112647576-112647928)
               

               
               1-429, gnl|galGal2|chr3 (76296127-76295751)
               

               
               1-429, gnl|hg17|chr6 (83903858-83904234)
               

               
               1-429, gnl|Hg17|chr6 (83903954-83904382)
               

               
               1-429, gnl|loxAfr1|scaffold_16627 (11591-11215)
               

               
               1-429, gnl|mm7|chr9 (86623475-86623848)
               

               
               1-429, gnl|Mm7|chr9 (86623571-86623996)
               

               
               1-429, gnl|monDom2|scaffold_0 (147015588-147015212)
               

               
               1-429, gnl|oryCun1|scaffold_145461 (5840-5464)
               

               
               1-429, gnl|panTro1|chr5 (85539554-85539930)
               

               
               1-429, gnl|rheMac2|chr4 (79166500-79166876)
               

               
               1-429, gnl|rn3|chr8 (91794517-91794890)
               

               
               1-429, gnl|xenTro1|scaffold_73 (2449682-2450056)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-429, gnl|bosTau2|chr9 (10041944-10042372)
               

               
               1-429, gnl|canFam2|chr12 (46557085-46557461)
               

               
               1-429, gnl|danRer3|chr16 (44200932-44200559)
               

               
               1-429, gnl|dasNov1|scaffold_55244 (36749-37125)
               

               
               1-429, gnl|echTel1|scaffold_293250 (1917-2290)
               

               
               1-429, gnl|fr1|chrUn (112647576-112647928)
               

               
               1-429, gnl|galGal2|chr3 (76296127-76295751)
               

               
               1-429, gnl|hg17|chr6 (83903858-83904234)
               

               
               1-429, gnl|Hg17|chr6 (83903954-83904382)
               

               
               1-429, gnl|loxAfr1|scaffold_16627 (11591-11215)
               

               
               1-429, gnl|mm7|chr9 (86623475-86623848)
               

               
               1-429, gnl|Mm7|chr9 (86623571-86623996)
               

               
               1-429, gnl|monDom2|scaffold_0 (147015588-147015212)
               

               
               1-429, gnl|oryCun1|scaffold_145461 (5840-5464)
               

               
               1-429, gnl|panTro1|chr5 (85539554-85539930)
               

               
               1-429, gnl|rheMac2|chr4 (79166500-79166876)
               

               
               1-429, gnl|rn3|chr8 (91794517-91794890)
               

               
               1-429, gnl|xenTro1|scaffold_73 (2449682-2450056)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-429, gnl\|bosTau2\|chr9 (10041944-10042372)
	1-429, gnl\|canFam2\|chr12 (46557085-46557461)
	1-429, gnl\|danRer3\|chr16 (44200932-44200559)
	1-429, gnl\|dasNov1\|scaffold_55244 (36749-37125)
	1-429, gnl\|echTel1\|scaffold_293250 (1917-2290)
	1-429, gnl\|fr1\|chrUn (112647576-112647928)
	1-429, gnl\|galGal2\|chr3 (76296127-76295751)
	1-429, gnl\|hg17\|chr6 (83903858-83904234)
	1-429, gnl\|Hg17\|chr6 (83903954-83904382)
	1-429, gnl\|loxAfr1\|scaffold_16627 (11591-11215)
	1-429, gnl\|mm7\|chr9 (86623475-86623848)
	1-429, gnl\|Mm7\|chr9 (86623571-86623996)
	1-429, gnl\|monDom2\|scaffold_0 (147015588-147015212)
	1-429, gnl\|oryCun1\|scaffold_145461 (5840-5464)
	1-429, gnl\|panTro1\|chr5 (85539554-85539930)
	1-429, gnl\|rheMac2\|chr4 (79166500-79166876)
	1-429, gnl\|rn3\|chr8 (91794517-91794890)
	1-429, gnl\|xenTro1\|scaffold_73 (2449682-2450056)