Non-Coding RNA Search

rlnt27c_m15.y1

Sequence:


               
               AGACACTGGTAGATGCAACAAACCCAGATTTATATTTGTTGTAAAGTTGTAAAAATATTG
TGATGTCACCAGTTTTCCTTCCATCTCCACATCCCCTAACATCTGATTCACAACTTCATG
TATGTTGTAAAAAAGAAAAAAGGGAAAAAAGACAAAAAAAGCAAGGAAAAGGCTCTTTAT
TACTTAAAAGTAATAAAACAAGACTGTTCTACATTCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACACTGGTAGATGCAACAAACCCAGATTTATATTTGTTGTAAAGTTGTAAAAATATTG
TGATGTCACCAGTTTTCCTTCCATCTCCACATCCCCTAACATCTGATTCACAACTTCATG
TATGTTGTAAAAAAGAAAAAAGGGAAAAAAGACAAAAAAAGCAAGGAAAAGGCTCTTTAT
TACTTAAAAGTAATAAAACAAGACTGTTCTACATTCAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-216, - strand, RNAz p=0.890026

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-216, - strand, RNAz p=0.890026

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               24-146, - strand, RNAmicro p=0.934844

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               24-146, - strand, RNAmicro p=0.934844

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-216, gnl|bosTau2|chr7 (25542094-25541864)
               

               
               1-216, gnl|canFam2|chr11 (9121023-9120715)
               

               
               1-216, gnl|dasNov1|scaffold_77 (90180-89904)
               

               
               1-216, gnl|echTel1|scaffold_318560 (5444-5742)
               

               
               1-216, gnl|galGal2|chrZ_random (6232378-6232699)
               

               
               1-216, gnl|hg17|chr11 (127998742-127999038)
               

               
               1-216, gnl|Hg17|chr5 (115807374-115807150)
               

               
               1-216, gnl|loxAfr1|scaffold_4130 (20727-21010)
               

               
               1-216, gnl|mm7|chr18 (47623046-47622742)
               

               
               1-216, gnl|Mm7|chr18 (47622975-47622742)
               

               
               1-216, gnl|monDom2|scaffold_55 (10932524-10932833)
               

               
               1-216, gnl|oryCun1|scaffold_197496 (13581-13831)
               

               
               1-216, gnl|panTro1|chr9 (130127675-130127970)
               

               
               1-216, gnl|rheMac2|chr14 (126755102-126755397)
               

               
               1-216, gnl|rn3|chr18 (41581019-41580711)
               

               
               1-216, gnl|xenTro1|scaffold_2 (6607766-6608057)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr7 (25542094-25541864)
               

               
               1-216, gnl|canFam2|chr11 (9121023-9120715)
               

               
               1-216, gnl|dasNov1|scaffold_77 (90180-89904)
               

               
               1-216, gnl|echTel1|scaffold_318560 (5444-5742)
               

               
               1-216, gnl|galGal2|chrZ_random (6232378-6232699)
               

               
               1-216, gnl|hg17|chr11 (127998742-127999038)
               

               
               1-216, gnl|Hg17|chr5 (115807374-115807150)
               

               
               1-216, gnl|loxAfr1|scaffold_4130 (20727-21010)
               

               
               1-216, gnl|mm7|chr18 (47623046-47622742)
               

               
               1-216, gnl|Mm7|chr18 (47622975-47622742)
               

               
               1-216, gnl|monDom2|scaffold_55 (10932524-10932833)
               

               
               1-216, gnl|oryCun1|scaffold_197496 (13581-13831)
               

               
               1-216, gnl|panTro1|chr9 (130127675-130127970)
               

               
               1-216, gnl|rheMac2|chr14 (126755102-126755397)
               

               
               1-216, gnl|rn3|chr18 (41581019-41580711)
               

               
               1-216, gnl|xenTro1|scaffold_2 (6607766-6608057)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-216, gnl\|bosTau2\|chr7 (25542094-25541864)
	1-216, gnl\|canFam2\|chr11 (9121023-9120715)
	1-216, gnl\|dasNov1\|scaffold_77 (90180-89904)
	1-216, gnl\|echTel1\|scaffold_318560 (5444-5742)
	1-216, gnl\|galGal2\|chrZ_random (6232378-6232699)
	1-216, gnl\|hg17\|chr11 (127998742-127999038)
	1-216, gnl\|Hg17\|chr5 (115807374-115807150)
	1-216, gnl\|loxAfr1\|scaffold_4130 (20727-21010)
	1-216, gnl\|mm7\|chr18 (47623046-47622742)
	1-216, gnl\|Mm7\|chr18 (47622975-47622742)
	1-216, gnl\|monDom2\|scaffold_55 (10932524-10932833)
	1-216, gnl\|oryCun1\|scaffold_197496 (13581-13831)
	1-216, gnl\|panTro1\|chr9 (130127675-130127970)
	1-216, gnl\|rheMac2\|chr14 (126755102-126755397)
	1-216, gnl\|rn3\|chr18 (41581019-41580711)
	1-216, gnl\|xenTro1\|scaffold_2 (6607766-6608057)