Non-Coding RNA Search

rlyg05_f16.y1

Sequence:


               
               GTTGCTGTGTATAATCATTATAAGAGAATATATAATAATATCCCAGCTAATCTGAGACAG
CAAGCAGAAGTTGAGAAACAGACATCATTAACACCTAGAGGTTAGTGTTTTGATAATTGA
CCAAAATAGCGATTACTGTACTTAGAAGTAATCCTTATTTTCAACTCTTTGCTTTTGTCT
TAAAATAATTTTAGTACAGTATAGCATTTTTTGAAATACAGGCCAGTTCCTGTTAGTGGC
TCATGAAATCATTTTGGTAGATCACCAGTAGCATTTAACATAGACAGATAGTTAAATGTG
AATAGAAAATACCAGTGTATGTTAACAACTTGTTAATTATTATTTCTTAAAACTTTTATG
TTCAGTTATATATGCATGGGTTCTGAGTCATACAGTAAAATGTACTTCTTAAAAGGGGTC
TTAGTAAAAAATATTTGAAAGGCATTGATGTACAGATTGAGACATCATTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCTGTGTATAATCATTATAAGAGAATATATAATAATATCCCAGCTAATCTGAGACAG
CAAGCAGAAGTTGAGAAACAGACATCATTAACACCTAGAGGTTAGTGTTTTGATAATTGA
CCAAAATAGCGATTACTGTACTTAGAAGTAATCCTTATTTTCAACTCTTTGCTTTTGTCT
TAAAATAATTTTAGTACAGTATAGCATTTTTTGAAATACAGGCCAGTTCCTGTTAGTGGC
TCATGAAATCATTTTGGTAGATCACCAGTAGCATTTAACATAGACAGATAGTTAAATGTG
AATAGAAAATACCAGTGTATGTTAACAACTTGTTAATTATTATTTCTTAAAACTTTTATG
TTCAGTTATATATGCATGGGTTCTGAGTCATACAGTAAAATGTACTTCTTAAAAGGGGTC
TTAGTAAAAAATATTTGAAAGGCATTGATGTACAGATTGAGACATCATTTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.926607

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.926607

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-384, gnl|bosTau2|chr10 (8546550-8546177)
               

               
               1-384, gnl|Hg17|chr15 (63243519-63243173)
               

               
               1-384, gnl|Mm7|chr9 (65339853-65340303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr10 (8546550-8546177)
               

               
               1-384, gnl|Hg17|chr15 (63243519-63243173)
               

               
               1-384, gnl|Mm7|chr9 (65339853-65340303)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lyg (0.133103)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)

	1-384, gnl\|bosTau2\|chr10 (8546550-8546177)
	1-384, gnl\|Hg17\|chr15 (63243519-63243173)
	1-384, gnl\|Mm7\|chr9 (65339853-65340303)