Non-Coding RNA Search

rlyg10_d17.y1

Sequence:


               
               GTTTTACCCAGCACCTCCGGACACTCACCTTCAAGACCTTAATAAAATTATTCACTTCAT
AAGTGTTCAGGTCTGTCTGATCACCCTCAGTAGCATGATGGATCTGCTATTTAAATTTCC
CGTGATCTGTTTAAAAAAATAAAAAGCCAAAAAAACCCCACTTATCTCTGTTACTAATGA
AGCTCTCCTTCCTTTTTTTCTGTTTCGTTCCATCGTTGAGTGTGTGATTTCCTTCATTAC
TTGGGAGTACTAACCCGGAAGTGTCTGTCTCTTTGTTCCGAGATTAATTTAGAAAAAGGA
ATACTGTATGTGAAATTCAGCTTGGGCTTTTCCAGAAATGCAAGATAAGGCCATGTGTAA
TATTTTCCCTAAAGTTAGAGTATATTAATGCATGTTTTGAGAATTTTAAAGCACCATGGT
CCCAACCAGAAGCTATATTTTGCATATTTGGACTCAGCCATCCATCAAGAACTTTTGTTG
TCCTTTGGTCATATTTATCAAAATAATTTTTGTTCTAAATAGTATAAAATAGAAAATTTG
TGATCTATATAATTTATGTATAACCTTCATTGTTGTAAATTTAGGGGGAAATGCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTACCCAGCACCTCCGGACACTCACCTTCAAGACCTTAATAAAATTATTCACTTCAT
AAGTGTTCAGGTCTGTCTGATCACCCTCAGTAGCATGATGGATCTGCTATTTAAATTTCC
CGTGATCTGTTTAAAAAAATAAAAAGCCAAAAAAACCCCACTTATCTCTGTTACTAATGA
AGCTCTCCTTCCTTTTTTTCTGTTTCGTTCCATCGTTGAGTGTGTGATTTCCTTCATTAC
TTGGGAGTACTAACCCGGAAGTGTCTGTCTCTTTGTTCCGAGATTAATTTAGAAAAAGGA
ATACTGTATGTGAAATTCAGCTTGGGCTTTTCCAGAAATGCAAGATAAGGCCATGTGTAA
TATTTTCCCTAAAGTTAGAGTATATTAATGCATGTTTTGAGAATTTTAAAGCACCATGGT
CCCAACCAGAAGCTATATTTTGCATATTTGGACTCAGCCATCCATCAAGAACTTTTGTTG
TCCTTTGGTCATATTTATCAAAATAATTTTTGTTCTAAATAGTATAAAATAGAAAATTTG
TGATCTATATAATTTATGTATAACCTTCATTGTTGTAAATTTAGGGGGAAATGCATCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               331-448, + strand, RNAz p=0.904909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               331-448, + strand, RNAz p=0.904909

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018206, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018206, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-598, gnl|bosTau2|chr18 (16217269-16217869)
               

               
               1-598, gnl|Hg17|chr16 (45251755-45251144)
               

               
               1-598, gnl|Mm7|chr8 (83851720-83851151)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr18 (16217269-16217869)
               

               
               1-598, gnl|Hg17|chr16 (45251755-45251144)
               

               
               1-598, gnl|Mm7|chr8 (83851720-83851151)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lyg (0.133103)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)

	1-598, gnl\|bosTau2\|chr18 (16217269-16217869)
	1-598, gnl\|Hg17\|chr16 (45251755-45251144)
	1-598, gnl\|Mm7\|chr8 (83851720-83851151)