Non-Coding RNA Search

rlyg31_h20.y1

Sequence:


               
               GATATAAATCAGATACATCCCATGGGAAATTAAAAGGGGATGCAGTTCACTGCCAGGGGT
TTTTCAGAAACATACAGAATTTGCTTGCTGTATTGCATTATAGAACTAAATTGATGGTGC
CTTTTGGCAGACAGAGCAGTGAGGGGTAGGAGCTATATCACATCTTTCAGCTTAAGAGAT
CAGCATAACATACAAAGCAAATGTGTAATTTAATACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATAAATCAGATACATCCCATGGGAAATTAAAAGGGGATGCAGTTCACTGCCAGGGGT
TTTTCAGAAACATACAGAATTTGCTTGCTGTATTGCATTATAGAACTAAATTGATGGTGC
CTTTTGGCAGACAGAGCAGTGAGGGGTAGGAGCTATATCACATCTTTCAGCTTAAGAGAT
CAGCATAACATACAAAGCAAATGTGTAATTTAATACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-154, - strand, RNAz p=0.805029

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-154, - strand, RNAz p=0.805029

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-217, gnl|bosTau2|chr10 (42887282-42887494)
               

               
               1-217, gnl|canFam2|chr30 (17513298-17513614)
               

               
               1-217, gnl|dasNov1|scaffold_511 (135724-136039)
               

               
               1-217, gnl|echTel1|scaffold_280868 (234-523)
               

               
               1-217, gnl|hg17|chr15 (46358195-46358508)
               

               
               1-217, gnl|Hg17|chr15 (46358466-46358234)
               

               
               1-217, gnl|mm7|chr2 (124949189-124949494)
               

               
               1-217, gnl|Mm7|chr2 (124949453-124949230)
               

               
               1-217, gnl|monDom2|scaffold_12 (20757390-20757048)
               

               
               1-217, gnl|oryCun1|scaffold_91817 (4953-5267)
               

               
               1-217, gnl|panTro1|chr16 (46333961-46334273)
               

               
               1-217, gnl|rheMac2|chr7 (26609167-26609480)
               

               
               1-217, gnl|rn3|chr3 (112417492-112417758)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-217, gnl|bosTau2|chr10 (42887282-42887494)
               

               
               1-217, gnl|canFam2|chr30 (17513298-17513614)
               

               
               1-217, gnl|dasNov1|scaffold_511 (135724-136039)
               

               
               1-217, gnl|echTel1|scaffold_280868 (234-523)
               

               
               1-217, gnl|hg17|chr15 (46358195-46358508)
               

               
               1-217, gnl|Hg17|chr15 (46358466-46358234)
               

               
               1-217, gnl|mm7|chr2 (124949189-124949494)
               

               
               1-217, gnl|Mm7|chr2 (124949453-124949230)
               

               
               1-217, gnl|monDom2|scaffold_12 (20757390-20757048)
               

               
               1-217, gnl|oryCun1|scaffold_91817 (4953-5267)
               

               
               1-217, gnl|panTro1|chr16 (46333961-46334273)
               

               
               1-217, gnl|rheMac2|chr7 (26609167-26609480)
               

               
               1-217, gnl|rn3|chr3 (112417492-112417758)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lyg (0.133103)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)

	1-217, gnl\|bosTau2\|chr10 (42887282-42887494)
	1-217, gnl\|canFam2\|chr30 (17513298-17513614)
	1-217, gnl\|dasNov1\|scaffold_511 (135724-136039)
	1-217, gnl\|echTel1\|scaffold_280868 (234-523)
	1-217, gnl\|hg17\|chr15 (46358195-46358508)
	1-217, gnl\|Hg17\|chr15 (46358466-46358234)
	1-217, gnl\|mm7\|chr2 (124949189-124949494)
	1-217, gnl\|Mm7\|chr2 (124949453-124949230)
	1-217, gnl\|monDom2\|scaffold_12 (20757390-20757048)
	1-217, gnl\|oryCun1\|scaffold_91817 (4953-5267)
	1-217, gnl\|panTro1\|chr16 (46333961-46334273)
	1-217, gnl\|rheMac2\|chr7 (26609167-26609480)
	1-217, gnl\|rn3\|chr3 (112417492-112417758)