Non-Coding RNA Search

rlyg33_g15.y1

Sequence:


               
               TTAGGATGCCACAAGTTTTAGGCCTCTCCATCCACCCTGTAATGTGGTTATGATGGTTTC
CTGTGTCTTAGTTAAGTTTTGCCATTGAAATCTCCAGAAGGGACCCTTAGACAGCATTTT
ACTCTGTTGTCTAGAACTGATCAAATTAGAGGAGATCAGAATCAGAATTGGAACAAGGGC
AAAGAGAAGAAACATATACAACTGGGACCATGAAATCGATAAGGAAGAGTTAATTGTGCT
ATATCTCCCTTAAAGTTTTCTTTGTCTCTGTTATTTACCCTGCCCCTAATACAAACATTG
GATGTCACTGGTGAGTTAAAAGATGGTAAATTTAGAATGTGTAGGAGTAGGCGACACTGC
CTGTCAGCCATATGTGGGGGTACAGAGTACATCCTAACTAACCCTGGTTCTCCTGCAGAT
TAAGGACAACTATGCATCTCTCTCTCCCTTCATGTTCAAATTTTGCCCAGGGGTAATTAT
ACTTTTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGATGCCACAAGTTTTAGGCCTCTCCATCCACCCTGTAATGTGGTTATGATGGTTTC
CTGTGTCTTAGTTAAGTTTTGCCATTGAAATCTCCAGAAGGGACCCTTAGACAGCATTTT
ACTCTGTTGTCTAGAACTGATCAAATTAGAGGAGATCAGAATCAGAATTGGAACAAGGGC
AAAGAGAAGAAACATATACAACTGGGACCATGAAATCGATAAGGAAGAGTTAATTGTGCT
ATATCTCCCTTAAAGTTTTCTTTGTCTCTGTTATTTACCCTGCCCCTAATACAAACATTG
GATGTCACTGGTGAGTTAAAAGATGGTAAATTTAGAATGTGTAGGAGTAGGCGACACTGC
CTGTCAGCCATATGTGGGGGTACAGAGTACATCCTAACTAACCCTGGTTCTCCTGCAGAT
TAAGGACAACTATGCATCTCTCTCTCCCTTCATGTTCAAATTTTGCCCAGGGGTAATTAT
ACTTTTACTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-196, - strand, RNAz p=0.649616
               

               
               305-422, + strand, RNAz p=0.724631

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, - strand, RNAz p=0.649616
               

               
               305-422, + strand, RNAz p=0.724631

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-490, gnl|bosTau2|chr15 (14959622-14959143)
               

               
               1-490, gnl|canFam2|chr5 (18154827-18154353)
               

               
               1-490, gnl|dasNov1|scaffold_26036 (52965-52493)
               

               
               1-490, gnl|echTel1|scaffold_316157 (72261-71804)
               

               
               1-490, gnl|hg17|chr11 (117972144-117972615)
               

               
               1-490, gnl|Hg17|chr11 (117972265-117972751)
               

               
               1-490, gnl|loxAfr1|scaffold_94192 (414-885)
               

               
               1-490, gnl|mm7|chr9 (44681608-44681181)
               

               
               1-490, gnl|Mm7|chr9 (44681487-44680881)
               

               
               1-490, gnl|monDom2|scaffold_2 (120064782-120064303)
               

               
               1-490, gnl|oryCun1|scaffold_157768 (11990-11541)
               

               
               1-490, gnl|panTro1|chr9 (119980866-119981337)
               

               
               1-490, gnl|rheMac2|chr14 (116996569-116997040)
               

               
               1-490, gnl|rn3|chr8 (47713785-47713345)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-490, gnl|bosTau2|chr15 (14959622-14959143)
               

               
               1-490, gnl|canFam2|chr5 (18154827-18154353)
               

               
               1-490, gnl|dasNov1|scaffold_26036 (52965-52493)
               

               
               1-490, gnl|echTel1|scaffold_316157 (72261-71804)
               

               
               1-490, gnl|hg17|chr11 (117972144-117972615)
               

               
               1-490, gnl|Hg17|chr11 (117972265-117972751)
               

               
               1-490, gnl|loxAfr1|scaffold_94192 (414-885)
               

               
               1-490, gnl|mm7|chr9 (44681608-44681181)
               

               
               1-490, gnl|Mm7|chr9 (44681487-44680881)
               

               
               1-490, gnl|monDom2|scaffold_2 (120064782-120064303)
               

               
               1-490, gnl|oryCun1|scaffold_157768 (11990-11541)
               

               
               1-490, gnl|panTro1|chr9 (119980866-119981337)
               

               
               1-490, gnl|rheMac2|chr14 (116996569-116997040)
               

               
               1-490, gnl|rn3|chr8 (47713785-47713345)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lyg (0.133103)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)

	79-196, - strand, RNAz p=0.649616
	305-422, + strand, RNAz p=0.724631

	1-490, gnl\|bosTau2\|chr15 (14959622-14959143)
	1-490, gnl\|canFam2\|chr5 (18154827-18154353)
	1-490, gnl\|dasNov1\|scaffold_26036 (52965-52493)
	1-490, gnl\|echTel1\|scaffold_316157 (72261-71804)
	1-490, gnl\|hg17\|chr11 (117972144-117972615)
	1-490, gnl\|Hg17\|chr11 (117972265-117972751)
	1-490, gnl\|loxAfr1\|scaffold_94192 (414-885)
	1-490, gnl\|mm7\|chr9 (44681608-44681181)
	1-490, gnl\|Mm7\|chr9 (44681487-44680881)
	1-490, gnl\|monDom2\|scaffold_2 (120064782-120064303)
	1-490, gnl\|oryCun1\|scaffold_157768 (11990-11541)
	1-490, gnl\|panTro1\|chr9 (119980866-119981337)
	1-490, gnl\|rheMac2\|chr14 (116996569-116997040)
	1-490, gnl\|rn3\|chr8 (47713785-47713345)