Non-Coding RNA Search

rmas901b_h22.y1

Sequence:


               
               GCCTTAAACAACTCAGGACATTTTATGGGCAAGAGACAAACTTCTATTGTGTGCAAGCAC
TTACACATTTTAGAATCTGCTTGTTACAACAGCTAGCATTATCCTAACTAGCACAAGTTA
TAAATATTTAGCATGTGACTATTGCTAGAGAGAGAGAGAGCAGACAGGAATTTCACCATT
TTTTCTGTTCTGTTTTCCTTTTCTGTTCTGATCTTTGCTTTCAATTCCTAAAAGCCATAA
CTAGCATCAGATAATTGCCTCTCTATTGAAATGTAGTGAGAATGAATAAATAAAATGGTA
CTTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTAAACAACTCAGGACATTTTATGGGCAAGAGACAAACTTCTATTGTGTGCAAGCAC
TTACACATTTTAGAATCTGCTTGTTACAACAGCTAGCATTATCCTAACTAGCACAAGTTA
TAAATATTTAGCATGTGACTATTGCTAGAGAGAGAGAGAGCAGACAGGAATTTCACCATT
TTTTCTGTTCTGTTTTCCTTTTCTGTTCTGATCTTTGCTTTCAATTCCTAAAAGCCATAA
CTAGCATCAGATAATTGCCTCTCTATTGAAATGTAGTGAGAATGAATAAATAAAATGGTA
CTTGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-290, - strand, RNAz p=0.974345

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-290, - strand, RNAz p=0.974345

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-290, gnl|bosTau2|chr4 (3150959-3151246)
               

               
               1-290, gnl|canFam2|chr14 (24943581-24943768)
               

               
               1-290, gnl|echTel1|scaffold_323707 (51481-51691)
               

               
               1-290, gnl|hg17|chr7 (96213068-96213304)
               

               
               1-290, gnl|Hg17|chr7 (96212740-96213442)
               

               
               1-290, gnl|loxAfr1|scaffold_2531 (74472-74276)
               

               
               1-290, gnl|mm7|chr6 (6744759-6744942)
               

               
               1-290, gnl|Mm7|chr6 (6744723-6745069)
               

               
               1-290, gnl|oryCun1|scaffold_214613 (124330-124101)
               

               
               1-290, gnl|panTro1|chr6 (97846255-97846496)
               

               
               1-290, gnl|rheMac2|chr3 (120336093-120335848)
               

               
               1-290, gnl|rn3|chr4 (31809676-31809940)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr4 (3150959-3151246)
               

               
               1-290, gnl|canFam2|chr14 (24943581-24943768)
               

               
               1-290, gnl|echTel1|scaffold_323707 (51481-51691)
               

               
               1-290, gnl|hg17|chr7 (96213068-96213304)
               

               
               1-290, gnl|Hg17|chr7 (96212740-96213442)
               

               
               1-290, gnl|loxAfr1|scaffold_2531 (74472-74276)
               

               
               1-290, gnl|mm7|chr6 (6744759-6744942)
               

               
               1-290, gnl|Mm7|chr6 (6744723-6745069)
               

               
               1-290, gnl|oryCun1|scaffold_214613 (124330-124101)
               

               
               1-290, gnl|panTro1|chr6 (97846255-97846496)
               

               
               1-290, gnl|rheMac2|chr3 (120336093-120335848)
               

               
               1-290, gnl|rn3|chr4 (31809676-31809940)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	1-290, gnl\|bosTau2\|chr4 (3150959-3151246)
	1-290, gnl\|canFam2\|chr14 (24943581-24943768)
	1-290, gnl\|echTel1\|scaffold_323707 (51481-51691)
	1-290, gnl\|hg17\|chr7 (96213068-96213304)
	1-290, gnl\|Hg17\|chr7 (96212740-96213442)
	1-290, gnl\|loxAfr1\|scaffold_2531 (74472-74276)
	1-290, gnl\|mm7\|chr6 (6744759-6744942)
	1-290, gnl\|Mm7\|chr6 (6744723-6745069)
	1-290, gnl\|oryCun1\|scaffold_214613 (124330-124101)
	1-290, gnl\|panTro1\|chr6 (97846255-97846496)
	1-290, gnl\|rheMac2\|chr3 (120336093-120335848)
	1-290, gnl\|rn3\|chr4 (31809676-31809940)