Non-Coding RNA Search

rmas908b_m7.y1

Sequence:


               
               CAAGTGTCTGCTCGGGACACGCTTCAGCCCTCTGTTGTCCCCTCTCCCCAAGGGGCTCCA
GGACCTTTGGGGTTTCTGTCACATTGACTCAAGAACCTGCGAGGACATAAGCGAGCCTTT
CGGAATCACCTCTAAGGAGCTGGACATGACCAAGGACGCGGCACTGCCGGAATCCCACTC
AGCACAGGGCTTCTATGAGAACTATGAGCCCAAGGAGATCCTGGGCAGGGGAGTGAGCAG
TGTGGTCCGGCGCTGCATCCACAAGCCCACATGCCAGGAGTACGCGGTGAAGATCATTGA
CATCACGGGCGGGGGCAGCTTCAGCTCCGAGGAGGTGCAGGAGCTGCGAGAGGCCACGTT
GAAGGAGGTGGACATCCTGCGCAAGGTCTCAGGCCACCCCAACATCATACAGCTCAAGGA
CACTTATGAGACCAACACTTTCTTCTTCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTGTCTGCTCGGGACACGCTTCAGCCCTCTGTTGTCCCCTCTCCCCAAGGGGCTCCA
GGACCTTTGGGGTTTCTGTCACATTGACTCAAGAACCTGCGAGGACATAAGCGAGCCTTT
CGGAATCACCTCTAAGGAGCTGGACATGACCAAGGACGCGGCACTGCCGGAATCCCACTC
AGCACAGGGCTTCTATGAGAACTATGAGCCCAAGGAGATCCTGGGCAGGGGAGTGAGCAG
TGTGGTCCGGCGCTGCATCCACAAGCCCACATGCCAGGAGTACGCGGTGAAGATCATTGA
CATCACGGGCGGGGGCAGCTTCAGCTCCGAGGAGGTGCAGGAGCTGCGAGAGGCCACGTT
GAAGGAGGTGGACATCCTGCGCAAGGTCTCAGGCCACCCCAACATCATACAGCTCAAGGA
CACTTATGAGACCAACACTTTCTTCTTCCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|554483|gb|AAA41844.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|554483|gb|AAA41844.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-104, gnl|bosTau2|chr25 (23541450-23541347)
               

               
               1-104, gnl|canFam2|chr6 (3579330-3579594)
               

               
               1-104, gnl|dasNov1|scaffold_1319 (151691-151946)
               

               
               1-104, gnl|echTel1|scaffold_308685 (41282-41020)
               

               
               1-104, gnl|hg17|chr7 (55934682-55934927)
               

               
               1-104, gnl|Hg17|chr7 (55934840-55934745)
               

               
               1-104, gnl|loxAfr1|scaffold_14093 (4913-4668)
               

               
               1-104, gnl|mm7|chr5 (129116732-129116960)
               

               
               1-104, gnl|Mm7|chr5 (129116870-129116766)
               

               
               1-104, gnl|panTro1|chr6 (57631553-57631796)
               

               
               1-104, gnl|rheMac2|chr3 (70034977-70034724)
               

               
               1-104, gnl|rn3|chr12 (27906818-27907050)
               


               
               227-407, gnl|bosTau2|chr25 (23538023-23537843)
               

               
               227-407, gnl|Hg17|chr7 (55929680-55929500)
               

               
               227-407, gnl|Mm7|chr5 (129111676-129111496)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-104, gnl|bosTau2|chr25 (23541450-23541347)
               

               
               1-104, gnl|canFam2|chr6 (3579330-3579594)
               

               
               1-104, gnl|dasNov1|scaffold_1319 (151691-151946)
               

               
               1-104, gnl|echTel1|scaffold_308685 (41282-41020)
               

               
               1-104, gnl|hg17|chr7 (55934682-55934927)
               

               
               1-104, gnl|Hg17|chr7 (55934840-55934745)
               

               
               1-104, gnl|loxAfr1|scaffold_14093 (4913-4668)
               

               
               1-104, gnl|mm7|chr5 (129116732-129116960)
               

               
               1-104, gnl|Mm7|chr5 (129116870-129116766)
               

               
               1-104, gnl|panTro1|chr6 (57631553-57631796)
               

               
               1-104, gnl|rheMac2|chr3 (70034977-70034724)
               

               
               1-104, gnl|rn3|chr12 (27906818-27907050)
               


               
               227-407, gnl|bosTau2|chr25 (23538023-23537843)
               

               
               227-407, gnl|Hg17|chr7 (55929680-55929500)
               

               
               227-407, gnl|Mm7|chr5 (129111676-129111496)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	1-104, gnl\|bosTau2\|chr25 (23541450-23541347)
	1-104, gnl\|canFam2\|chr6 (3579330-3579594)
	1-104, gnl\|dasNov1\|scaffold_1319 (151691-151946)
	1-104, gnl\|echTel1\|scaffold_308685 (41282-41020)
	1-104, gnl\|hg17\|chr7 (55934682-55934927)
	1-104, gnl\|Hg17\|chr7 (55934840-55934745)
	1-104, gnl\|loxAfr1\|scaffold_14093 (4913-4668)
	1-104, gnl\|mm7\|chr5 (129116732-129116960)
	1-104, gnl\|Mm7\|chr5 (129116870-129116766)
	1-104, gnl\|panTro1\|chr6 (57631553-57631796)
	1-104, gnl\|rheMac2\|chr3 (70034977-70034724)
	1-104, gnl\|rn3\|chr12 (27906818-27907050)

	227-407, gnl\|bosTau2\|chr25 (23538023-23537843)
	227-407, gnl\|Hg17\|chr7 (55929680-55929500)
	227-407, gnl\|Mm7\|chr5 (129111676-129111496)