Non-Coding RNA Search

rmas913b_m19.y1

Sequence:


               
               AAGGATATCATACTAGAAAACCACATGATCTTAAAACTCCCTGGATTATTTCTTGAAGCC
CTATTTTCCTCATCTTTGTGACAGAGGTAATATAATGAGGTACCTGTCCAGCCTACCTCA
CAGGGATGTTGTGAGGATAAAATGAGATAATATCTATGGAACTGGCTTGAAAAAAAAAGT
AAAATGTTATAAAATGCAAGGGTGGTATTTTTTATACTTAGAGTTGCCTCAAAGGCAACT
TGTGTTCATGAGCTCTAAGAATTTTAGTGTCCTTGCACATTAGAAATGTAAAAATGGTCT
GGCCCAGCAAAAGTGTTTACTAGCTCCTCTTGCCTACAGGCTTTAGCCTGTACCACAGAC
AGGACACTGTAATCTCCATTCTTTCTTACTGGTCAGCAACGGTGACTCTGGATTCCCAAG
CTCTTGGCTGGCTGTTGCAGGCTGGTTAATAGAATCTTTTATCTATTGAAGACAGCAAAG
TATTGCACAAGAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGATATCATACTAGAAAACCACATGATCTTAAAACTCCCTGGATTATTTCTTGAAGCC
CTATTTTCCTCATCTTTGTGACAGAGGTAATATAATGAGGTACCTGTCCAGCCTACCTCA
CAGGGATGTTGTGAGGATAAAATGAGATAATATCTATGGAACTGGCTTGAAAAAAAAAGT
AAAATGTTATAAAATGCAAGGGTGGTATTTTTTATACTTAGAGTTGCCTCAAAGGCAACT
TGTGTTCATGAGCTCTAAGAATTTTAGTGTCCTTGCACATTAGAAATGTAAAAATGGTCT
GGCCCAGCAAAAGTGTTTACTAGCTCCTCTTGCCTACAGGCTTTAGCCTGTACCACAGAC
AGGACACTGTAATCTCCATTCTTTCTTACTGGTCAGCAACGGTGACTCTGGATTCCCAAG
CTCTTGGCTGGCTGTTGCAGGCTGGTTAATAGAATCTTTTATCTATTGAAGACAGCAAAG
TATTGCACAAGAGGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               66-301, - strand, RNAz p=0.998567
               

               
               379-491, + strand, RNAz p=0.653593

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               66-301, - strand, RNAz p=0.998567
               

               
               379-491, + strand, RNAz p=0.653593

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-496, gnl|bosTau2|chr7 (34703005-34702515)
               

               
               1-496, gnl|Hg17|chr5 (137521876-137521382)
               

               
               1-496, gnl|Mm7|chr18 (34977030-34976221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-496, gnl|bosTau2|chr7 (34703005-34702515)
               

               
               1-496, gnl|Hg17|chr5 (137521876-137521382)
               

               
               1-496, gnl|Mm7|chr18 (34977030-34976221)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	66-301, - strand, RNAz p=0.998567
	379-491, + strand, RNAz p=0.653593

	1-496, gnl\|bosTau2\|chr7 (34703005-34702515)
	1-496, gnl\|Hg17\|chr5 (137521876-137521382)
	1-496, gnl\|Mm7\|chr18 (34977030-34976221)