Non-Coding RNA Search

rmas916b_a6.y1

Sequence:


               
               TCTCAGCAGGACAGCCCTGGGCCCTCCGAGGGCACGGAAGCAGGCCCCGCCCCATTCCCC
TTTCATTAGCCGGTCACAGAGCTGGGACCCCTGTGTCCATGGGAACAGAGCAAGGGAAAC
TGACACCTCAGGGCACTGGGACCTGAATTATTCAAAATCTGTAAGTCAGCACCCAGGCTC
AGCTCATGCCCAGCCTGGAGGGTAGAGAGATGCCACAGTCAAGACCTGTAGGAGATGGGG
CTTAAAGGGGGGGCGGGAGGGCCTGGGGGTGGTTACTGTCGTCCCAGCTGTTATCTTTGA
TGCATTCCTGAGGCTCCCTTTAGGCTGTCAGCTCTGCCCTCAATGAAGGACTGAGCACAT
CCAAGCTAGCGCTTTGTGCCAAACCAGCCCTCTCCTCCTAGTGGGAATAGTGCCAAGCCT
CAGGCTGCTCCAGGTGGCCCCACAAAGCACAAGGTGCAGCCCAGATCTTCACCCCGGAGT
GCCCACAGCCACCCCTGTTTCAGCCTCGGTATTCTGCCCACGCCCACACGTGCTGGGCTA
CGGTACATATGCCGCGGGAGTGGCTCAAGAAAAATGCAAGAAAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCAGCAGGACAGCCCTGGGCCCTCCGAGGGCACGGAAGCAGGCCCCGCCCCATTCCCC
TTTCATTAGCCGGTCACAGAGCTGGGACCCCTGTGTCCATGGGAACAGAGCAAGGGAAAC
TGACACCTCAGGGCACTGGGACCTGAATTATTCAAAATCTGTAAGTCAGCACCCAGGCTC
AGCTCATGCCCAGCCTGGAGGGTAGAGAGATGCCACAGTCAAGACCTGTAGGAGATGGGG
CTTAAAGGGGGGGCGGGAGGGCCTGGGGGTGGTTACTGTCGTCCCAGCTGTTATCTTTGA
TGCATTCCTGAGGCTCCCTTTAGGCTGTCAGCTCTGCCCTCAATGAAGGACTGAGCACAT
CCAAGCTAGCGCTTTGTGCCAAACCAGCCCTCTCCTCCTAGTGGGAATAGTGCCAAGCCT
CAGGCTGCTCCAGGTGGCCCCACAAAGCACAAGGTGCAGCCCAGATCTTCACCCCGGAGT
GCCCACAGCCACCCCTGTTTCAGCCTCGGTATTCTGCCCACGCCCACACGTGCTGGGCTA
CGGTACATATGCCGCGGGAGTGGCTCAAGAAAAATGCAAGAAAACAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               183-275, + strand, RNAz p=0.607195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-275, + strand, RNAz p=0.607195

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               50-307, gnl|bosTau2|chr15 (32809920-32810182)
               

               
               50-307, gnl|canFam2|chr21 (29226110-29226800)
               

               
               50-307, gnl|dasNov1|scaffold_6133 (60527-61233)
               

               
               50-307, gnl|echTel1|scaffold_319492 (186097-185467)
               

               
               50-307, gnl|hg17|chr11 (3649195-3649885)
               

               
               50-307, gnl|Hg17|chr11 (3649621-3649940)
               

               
               50-307, gnl|mm7|chr7 (98162473-98163058)
               

               
               50-307, gnl|Mm7|chr7 (98162818-98163111)
               

               
               50-307, gnl|panTro1|chr9 (3791455-3792145)
               

               
               50-307, gnl|rheMac2|chr14 (69886914-69886192)
               

               
               50-307, gnl|rn3|chr1 (159674114-159674673)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-307, gnl|bosTau2|chr15 (32809920-32810182)
               

               
               50-307, gnl|canFam2|chr21 (29226110-29226800)
               

               
               50-307, gnl|dasNov1|scaffold_6133 (60527-61233)
               

               
               50-307, gnl|echTel1|scaffold_319492 (186097-185467)
               

               
               50-307, gnl|hg17|chr11 (3649195-3649885)
               

               
               50-307, gnl|Hg17|chr11 (3649621-3649940)
               

               
               50-307, gnl|mm7|chr7 (98162473-98163058)
               

               
               50-307, gnl|Mm7|chr7 (98162818-98163111)
               

               
               50-307, gnl|panTro1|chr9 (3791455-3792145)
               

               
               50-307, gnl|rheMac2|chr14 (69886914-69886192)
               

               
               50-307, gnl|rn3|chr1 (159674114-159674673)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	50-307, gnl\|bosTau2\|chr15 (32809920-32810182)
	50-307, gnl\|canFam2\|chr21 (29226110-29226800)
	50-307, gnl\|dasNov1\|scaffold_6133 (60527-61233)
	50-307, gnl\|echTel1\|scaffold_319492 (186097-185467)
	50-307, gnl\|hg17\|chr11 (3649195-3649885)
	50-307, gnl\|Hg17\|chr11 (3649621-3649940)
	50-307, gnl\|mm7\|chr7 (98162473-98163058)
	50-307, gnl\|Mm7\|chr7 (98162818-98163111)
	50-307, gnl\|panTro1\|chr9 (3791455-3792145)
	50-307, gnl\|rheMac2\|chr14 (69886914-69886192)
	50-307, gnl\|rn3\|chr1 (159674114-159674673)