Non-Coding RNA Search

rmas920b_g7.y1

Sequence:


               
               CAGAGGTAGAGAAGGGCCCCCTGGGCCCCCTGGGGGAGGTACCTGTTCCTCCAGCCTTTT
CCCCAGGTGCCCTGGCTTCTCAGCTATGCTGACCCCCGAAGCGCCCATCAAGAGGCAAGT
GCAGGGAGAAAGGGGTGTCAAGGTAGAGAGGCTCCCCACGGGAAGGTCAGAGGTCAAGGG
TCAGCCTCTTGTAAGCAAAGCCTGAGCCCCCTTCAGGCCTCTCTGGGAATTCCATAGTGG
GACCCCCCTAATTACCCTGTAGGGAGAGGCCTCCTGGGGAAACTGTTTTCATCAGCAATT
ATTTCATCAATTATTTCATCAGATAATTTGGACATGAGCCCCTTACAGGGGCCTGCATGT
CTGAAGGAGGAGGGTCTGGCTGCCGTGTTGAGGGGATGGGTCAGAACTCTTTGCAGTCCA
TTGCTAAGGCAGGTTGGTGTGGTCAGCACTGGGCTGGTTGCAAGAGGCCAGTGAGTGGAC
AAGTATGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGTAGAGAAGGGCCCCCTGGGCCCCCTGGGGGAGGTACCTGTTCCTCCAGCCTTTT
CCCCAGGTGCCCTGGCTTCTCAGCTATGCTGACCCCCGAAGCGCCCATCAAGAGGCAAGT
GCAGGGAGAAAGGGGTGTCAAGGTAGAGAGGCTCCCCACGGGAAGGTCAGAGGTCAAGGG
TCAGCCTCTTGTAAGCAAAGCCTGAGCCCCCTTCAGGCCTCTCTGGGAATTCCATAGTGG
GACCCCCCTAATTACCCTGTAGGGAGAGGCCTCCTGGGGAAACTGTTTTCATCAGCAATT
ATTTCATCAATTATTTCATCAGATAATTTGGACATGAGCCCCTTACAGGGGCCTGCATGT
CTGAAGGAGGAGGGTCTGGCTGCCGTGTTGAGGGGATGGGTCAGAACTCTTTGCAGTCCA
TTGCTAAGGCAGGTTGGTGTGGTCAGCACTGGGCTGGTTGCAAGAGGCCAGTGAGTGGAC
AAGTATGAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-307, - strand, RNAz p=0.992492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-307, - strand, RNAz p=0.992492

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-485, gnl|bosTau2|chr2 (64429895-64429411)
               

               
               1-485, gnl|Hg17|chr2 (220125636-220126136)
               

               
               1-485, gnl|Mm7|chr1 (75602069-75602551)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-485, gnl|bosTau2|chr2 (64429895-64429411)
               

               
               1-485, gnl|Hg17|chr2 (220125636-220126136)
               

               
               1-485, gnl|Mm7|chr1 (75602069-75602551)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	1-485, gnl\|bosTau2\|chr2 (64429895-64429411)
	1-485, gnl\|Hg17\|chr2 (220125636-220126136)
	1-485, gnl\|Mm7\|chr1 (75602069-75602551)