Non-Coding RNA Search

rmas929b_e5.y1

Sequence:


               
               GGAAAGTCAGAAGACATATGTGTCCTACGTAAGGACATCAAAGACCTGAAGGCCCAGCTG
CAGAATGCCAACAAGGTCATTCAAAACCTGAAGAGCCGGGTCCGGTCCCTCTCAGTTACA
AGCGATTATTCATCTAGTCTGGAGAGACCCCGGAAGCTGAAGGCTGCTGGTACCCTTGAG
GGATCTTCACCGCACAGTGTCACTGATGAGGACGAAGGGTGGCTGTCTGATGGCACAGGG
GCTTTCTACCCCCCAGGGCTTCAGGCTAAAAAGGATCTGGAGAGTCTGATCCAGAGGGTA
TCCCAGCTGGAAGCCCAGCTTCCAAAAACTGGAACAGAAGGGAAGCTGGCTGAGGAGCTG
AGATCAGCCTCGTGGCCTGGGAAATATGATTCCCTGATTCAGGACCAGGCCCGAGAACTC
TCTTACCTACGCCAGAAAATACGAGAAGGGAGAGGTATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGTCAGAAGACATATGTGTCCTACGTAAGGACATCAAAGACCTGAAGGCCCAGCTG
CAGAATGCCAACAAGGTCATTCAAAACCTGAAGAGCCGGGTCCGGTCCCTCTCAGTTACA
AGCGATTATTCATCTAGTCTGGAGAGACCCCGGAAGCTGAAGGCTGCTGGTACCCTTGAG
GGATCTTCACCGCACAGTGTCACTGATGAGGACGAAGGGTGGCTGTCTGATGGCACAGGG
GCTTTCTACCCCCCAGGGCTTCAGGCTAAAAAGGATCTGGAGAGTCTGATCCAGAGGGTA
TCCCAGCTGGAAGCCCAGCTTCCAAAAACTGGAACAGAAGGGAAGCTGGCTGAGGAGCTG
AGATCAGCCTCGTGGCCTGGGAAATATGATTCCCTGATTCAGGACCAGGCCCGAGAACTC
TCTTACCTACGCCAGAAAATACGAGAAGGGAGAGGTATCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-384, + strand, RNAz p=0.99183

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-384, + strand, RNAz p=0.99183

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               276-370, - strand, RNAmicro p=0.998341
               

               
               238-315, + strand, RNAmicro p=0.975118

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-370, - strand, RNAmicro p=0.998341
               

               
               238-315, + strand, RNAmicro p=0.975118

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               241-384, DA242669 BRAWH3 Homo sapiens cDNA clone BRAWH3040708 5', mRNA 
(dbj|DA242669.1|), blast E-value=1.4013e-45, identity=91.67% 
               

               
               241-384, DKFZp459O1751_r1 459 (synonym (emb|CR768642.1|), blast 
E-value=1.4013e-45, identity=91.67% 
               

               
               241-384, 4000665 BARC 5BOV Bos taurus cDNA clone 5BOV_78O18 5', mRNA 
(gb|CA034894.1|), blast E-value=0, identity=94.44% 
               

               
               241-384, LB03024.CR_J17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932049.1|), 
blast E-value=0, identity=94.44% 
               

               
               241-384, 001212BAMA009100HT BAMA Bos taurus cDNA, mRNA sequence 
(gb|DY155701.1|), blast E-value=0, identity=94.44% 
               

               
               241-384, LB03039.CR_H03 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE376976.1|), 
blast E-value=0, identity=94.44%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               241-384, DA242669 BRAWH3 Homo sapiens cDNA clone BRAWH3040708 5', mRNA 
(dbj|DA242669.1|), blast E-value=1.4013e-45, identity=91.67% 
               

               
               241-384, DKFZp459O1751_r1 459 (synonym (emb|CR768642.1|), blast 
E-value=1.4013e-45, identity=91.67% 
               

               
               241-384, 4000665 BARC 5BOV Bos taurus cDNA clone 5BOV_78O18 5', mRNA 
(gb|CA034894.1|), blast E-value=0, identity=94.44% 
               

               
               241-384, LB03024.CR_J17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932049.1|), 
blast E-value=0, identity=94.44% 
               

               
               241-384, 001212BAMA009100HT BAMA Bos taurus cDNA, mRNA sequence 
(gb|DY155701.1|), blast E-value=0, identity=94.44% 
               

               
               241-384, LB03039.CR_H03 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE376976.1|), 
blast E-value=0, identity=94.44%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-384, gnl|bosTau2|chr3 (17968090-17967707)
               

               
               1-384, gnl|Hg17|chr1 (142368458-142368075)
               

               
               1-384, gnl|Mm7|chr3 (97586784-97586401)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr3 (17968090-17967707)
               

               
               1-384, gnl|Hg17|chr1 (142368458-142368075)
               

               
               1-384, gnl|Mm7|chr3 (97586784-97586401)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	276-370, - strand, RNAmicro p=0.998341
	238-315, + strand, RNAmicro p=0.975118

	241-384, DA242669 BRAWH3 Homo sapiens cDNA clone BRAWH3040708 5', mRNA (dbj\|DA242669.1\|), blast E-value=1.4013e-45, identity=91.67%
	241-384, DKFZp459O1751_r1 459 (synonym (emb\|CR768642.1\|), blast E-value=1.4013e-45, identity=91.67%
	241-384, 4000665 BARC 5BOV Bos taurus cDNA clone 5BOV_78O18 5', mRNA (gb\|CA034894.1\|), blast E-value=0, identity=94.44%
	241-384, LB03024.CR_J17 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV932049.1\|), blast E-value=0, identity=94.44%
	241-384, 001212BAMA009100HT BAMA Bos taurus cDNA, mRNA sequence (gb\|DY155701.1\|), blast E-value=0, identity=94.44%
	241-384, LB03039.CR_H03 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE376976.1\|), blast E-value=0, identity=94.44%

	1-384, gnl\|bosTau2\|chr3 (17968090-17967707)
	1-384, gnl\|Hg17\|chr1 (142368458-142368075)
	1-384, gnl\|Mm7\|chr3 (97586784-97586401)