Non-Coding RNA Search

rmcp04c_i19.y1

Sequence:


               
               CTTAGAAGTGTGACCCCAGCTGCAGCCATGAGGTGTCTCCTGCTCACCCTGGGCCTGGCC
CTCCTGTGTGGCGTTCAGGCCGTCGAAGTCACCCCGATCATGACGGAGCTGGACACCCAA
AAGGTGGCCGGGACATGGCACACCGTGGCCATGGCGGTCAGCGACGTCTCCCTGCTGGAC
GCCAAGAGCAGCCCCCTGAAGGCGTATGTGGAGGGGCTGAAGCCCACCCCCGAGGGCGAC
CTGGAGATCCTCCTGCAGAAGCGGGAGAATGACAAGTGTGCCCAGGAGGTGCTCCTTGCA
AAAAAAACCGACATCCCTGCCGTGTTCAAGATCAATGCCCTGGACGAGAACCAGCTCTTC
CTGCTGGACACTGACTACGACAGCCACCTGCTCCTCTGCATGGAGAACAGCGCCAGCCCC
GAGCACAGCCTGGTCTGCCAGAGCCTGGCCAGGACCCTGGAGGTGGACGACCAGATCAGG
GAGAAATTTGAAGATGCCCTCAAGACGCTGTCTGTGCCCATGCGGATCCTGCCAGCCCAG
CTGGAAGAGCAGTGCCGCGTCTAGGGGAGCTCCCGCCATCACCTCCGGGGGGCCCCTCTG
GGGAGACAAGATATCACCCCACCTCCCCATCAGCGGAATCAGGAGGGCCTGGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGAAGTGTGACCCCAGCTGCAGCCATGAGGTGTCTCCTGCTCACCCTGGGCCTGGCC
CTCCTGTGTGGCGTTCAGGCCGTCGAAGTCACCCCGATCATGACGGAGCTGGACACCCAA
AAGGTGGCCGGGACATGGCACACCGTGGCCATGGCGGTCAGCGACGTCTCCCTGCTGGAC
GCCAAGAGCAGCCCCCTGAAGGCGTATGTGGAGGGGCTGAAGCCCACCCCCGAGGGCGAC
CTGGAGATCCTCCTGCAGAAGCGGGAGAATGACAAGTGTGCCCAGGAGGTGCTCCTTGCA
AAAAAAACCGACATCCCTGCCGTGTTCAAGATCAATGCCCTGGACGAGAACCAGCTCTTC
CTGCTGGACACTGACTACGACAGCCACCTGCTCCTCTGCATGGAGAACAGCGCCAGCCCC
GAGCACAGCCTGGTCTGCCAGAGCCTGGCCAGGACCCTGGAGGTGGACGACCAGATCAGG
GAGAAATTTGAAGATGCCCTCAAGACGCTGTCTGTGCCCATGCGGATCCTGCCAGCCCAG
CTGGAAGAGCAGTGCCGCGTCTAGGGGAGCTCCCGCCATCACCTCCGGGGGGCCCCTCTG
GGGAGACAAGATATCACCCCACCTCCCCATCAGCGGAATCAGGAGGGCCTGGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11513708|pdb|1EXS|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11513708|pdb|1EXS|A

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               122-260, gnl|bosTau2|chr11 (85736249-85736387)
               

               
               122-260, gnl|Hg17|chr9 (135680083-135680221)
               


               
               337-448, gnl|bosTau2|chr11 (85738483-85738594)
               

               
               337-448, gnl|canFam2|chr9 (53024980-53024871)
               

               
               337-448, gnl|hg17|chr9 (135676899-135677008)
               

               
               337-448, gnl|Hg17|chr9 (135682028-135682145)
               

               
               337-448, gnl|panTro1|chr11 (120554966-120555075)
               

               
               337-448, gnl|rheMac2|chr15 (2764557-2764448)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-260, gnl|bosTau2|chr11 (85736249-85736387)
               

               
               122-260, gnl|Hg17|chr9 (135680083-135680221)
               


               
               337-448, gnl|bosTau2|chr11 (85738483-85738594)
               

               
               337-448, gnl|canFam2|chr9 (53024980-53024871)
               

               
               337-448, gnl|hg17|chr9 (135676899-135677008)
               

               
               337-448, gnl|Hg17|chr9 (135682028-135682145)
               

               
               337-448, gnl|panTro1|chr11 (120554966-120555075)
               

               
               337-448, gnl|rheMac2|chr15 (2764557-2764448)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	122-260, gnl\|bosTau2\|chr11 (85736249-85736387)
	122-260, gnl\|Hg17\|chr9 (135680083-135680221)

	337-448, gnl\|bosTau2\|chr11 (85738483-85738594)
	337-448, gnl\|canFam2\|chr9 (53024980-53024871)
	337-448, gnl\|hg17\|chr9 (135676899-135677008)
	337-448, gnl\|Hg17\|chr9 (135682028-135682145)
	337-448, gnl\|panTro1\|chr11 (120554966-120555075)
	337-448, gnl\|rheMac2\|chr15 (2764557-2764448)